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1. single-cell-best-practices single-cell-best-practices Public

   https://www.sc-best-practices.org

   Jupyter Notebook 1.2k 261

2. scvelo scvelo Public

   RNA Velocity generalized through dynamical modeling

   Python 495 111

3. scarches scarches Public

   Reference mapping for single-cell genomics

   Jupyter Notebook 401 70

4. scib scib Public

   Benchmarking analysis of data integration tools

   Python 410 75

5. ehrapy ehrapy Public

   Electronic Health Record Analysis with Python.

   Python 337 44

6. moscot moscot Public

   Multi-omic single-cell optimal transport tools

   Python 200 17