Repositories list

• STACAME

  Public
  Code for STACAME

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 22, 2026Apr 22, 2026

• Learn4TSP

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 24, 2026Mar 24, 2026

• STAMO

  Public
  STAMO is designed for diagonal integration of unpaired spatial multi-omics data.

  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 16, 2026Mar 16, 2026

• OTAD

  Public

  zhanglabtools/OTAD’s past year of commit activity
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 15, 2026Mar 15, 2026

• STAMapper

  Public

  zhanglabtools/STAMapper’s past year of commit activity
  Jupyter Notebook

  •

  MIT License

  •44 forks•88 stars•00 issues•00 pull requests•Updated Feb 11, 2026Feb 11, 2026

• STAX

  Public
  Python

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Dec 22, 2025Dec 22, 2025

• scFM-batcheffect

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Dec 20, 2025Dec 20, 2025

• CAMEX

  Public

  zhanglabtools/CAMEX’s past year of commit activity
  Jupyter Notebook

  •

  MIT License

  •66 forks•1212 stars•11 issue•11 pull request•Updated Dec 19, 2025Dec 19, 2025

• STAVAG

  Public

  zhanglabtools/STAVAG’s past year of commit activity
  Uncovering directionally and temporally variable genes with STAVAG

  Jupyter Notebook

  •00 forks•44 stars•00 issues•00 pull requests•Updated Nov 15, 2025Nov 15, 2025

• STADiffuser

  Public

  zhanglabtools/STADiffuser’s past year of commit activity
  Python

  •

  MIT License

  •22 forks•00 stars•00 issues•00 pull requests•Updated Sep 20, 2025Sep 20, 2025

• CAMUS

  Public
  Jupyter Notebook

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 21, 2025Aug 21, 2025

• NPC_scRNA_Spatial_code

  Public

  zhanglabtools/NPC_scRNA_Spatial_code’s past year of commit activity
  Data Analysis Process of "Single-cell and spatial transcriptomics reveal the molecular and histological mechanisms of radioresistance and immune escape in recur…

  Jupyter Notebook

  •33 forks•1111 stars•00 issues•00 pull requests•Updated Mar 29, 2025Mar 29, 2025

• DeepLearningTheory.course.2024

  Public
  Deep Learning Theory course

  44 forks•44 stars•00 issues•00 pull requests•Updated Jan 8, 2025Jan 8, 2025

• Mactop

  Public
  deciphering chromatin domain, domain community and chromunity for 3D genome maps

  Jupyter Notebook

  •

  MIT License

  •33 forks•33 stars•00 issues•00 pull requests•Updated Dec 30, 2024Dec 30, 2024

• TADGATE

  Public
  TADGATE is a computational tool to identify TADs in Hi-C contact map with a graph attention autoencoder.

  Jupyter Notebook

  •

  MIT License

  •22 forks•44 stars•00 issues•11 pull request•Updated Dec 27, 2024Dec 27, 2024

• STALocator

  Public

  zhanglabtools/STALocator’s past year of commit activity
  Jupyter Notebook

  •

  MIT License

  •11 fork•1010 stars•00 issues•00 pull requests•Updated Dec 14, 2024Dec 14, 2024

• STADIA

  Public
  C++

  •

  GNU General Public License v3.0

  •44 forks•11 star•00 issues•00 pull requests•Updated Oct 15, 2024Oct 15, 2024

• BrainAlign

  Public
  Code for "Whole brain alignment of spatial transcriptomics between humans and mice with BrainAlign"

  brainspatial-transcriptomicscross-species

  brainspatial-transcriptomicscross-species

  Python

  •

  MIT License

  •22 forks•1515 stars•22 issues•00 pull requests•Updated Oct 4, 2024Oct 4, 2024

• STABox

  Public
  Interactive analysis and visualization of spatial transcriptome GUI program

  Jupyter Notebook

  •44 forks•00 stars•00 issues•11 pull request•Updated Jul 29, 2024Jul 29, 2024

• STAMarker

  Public
  STAMarker: Identify Spatial Domain-specific Variable Genes via Ensemble Graph Attention Autoencoders

  Jupyter Notebook

  •55 forks•55 stars•00 issues•00 pull requests•Updated Jul 16, 2024Jul 16, 2024

• STASCAN

  Public
  Python

  •

  MIT License

  •66 forks•00 stars•00 issues•00 pull requests•Updated Jul 15, 2024Jul 15, 2024

• ImputeHiFI

  Public
  ImputeHiFI: An Imputation Method for Multiplexed DNA FISH Data by Utilizing Single-Cell Hi-C and RNA FISH Data

  Jupyter Notebook

  •

  MIT License

  •22 forks•22 stars•00 issues•00 pull requests•Updated Jun 8, 2024Jun 8, 2024

• STAGE

  Public
  Jupyter Notebook

  •

  MIT License

  •22 forks•1111 stars•00 issues•00 pull requests•Updated Jun 5, 2024Jun 5, 2024

• STAligner

  Public
  STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages

  Jupyter Notebook

  •

  MIT License

  •99 forks•2626 stars•00 issues•00 pull requests•Updated Dec 26, 2023Dec 26, 2023

• CAME

  Public
  Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.

  Python

  •

  MIT License

  •88 forks•1010 stars•00 issues•11 pull request•Updated Oct 30, 2023Oct 30, 2023

• ConsTADs

  Public
  Consensus TADs

  Jupyter Notebook

  •

  MIT License

  •00 forks•55 stars•00 issues•00 pull requests•Updated Jul 11, 2023Jul 11, 2023

• AI4OR.course

  Public
  Artificial Intelligence for Operations Research course

  11 fork•1111 stars•00 issues•00 pull requests•Updated May 18, 2023May 18, 2023

• TWAE

  Public
  A non-adversarial generative autoencoder with divide-and-conquer strategy

  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 18, 2023Apr 18, 2023

• MN-PCA

  Public
  Matrix normal PCA for interpretable dimension reduction and graphical noise modeling

  MATLAB

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 22, 2023Feb 22, 2023

• SmartGate

  Public
  Jupyter Notebook

  •22 forks•11 star•00 issues•00 pull requests•Updated Oct 5, 2022Oct 5, 2022