Repositories list

• sgn

  Public
  The code behind the Sol Genomics Network, Cassavabase and other Breedbase websites

  perl

  perl

  PLpgSQL

  •

  MIT License

  •4141 forks•7575 stars•585585 issues•1313 pull requests•Updated Apr 22, 2026Apr 22, 2026

• breedbase_dockerfile

  Public
  The Dockerfiles for breeDBase

  Dockerfile

  •

  MIT License

  •1010 forks•1212 stars•00 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• cassbase

  Public
  The mason components for the cassbase database, a variation of cassavabase for the CASS project

  Perl

  •

  MIT License

  •00 forks•00 stars•11 issue•11 pull request•Updated Apr 16, 2026Apr 16, 2026

• inventory.breedbase.org

  Public
  a breedbase instance for a crop agnostic inventory management system for BI OnRamp

  PLpgSQL

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 10, 2026Apr 10, 2026

• sugarcane

  Public
  PLpgSQL

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 8, 2026Apr 8, 2026

• sugarcane-industry

  Public
  PLpgSQL

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 8, 2026Apr 8, 2026

• breedbase_site

  Public template
  Minimum install for Breedbase

  PLpgSQL

  •

  MIT License

  •22 forks•33 stars•00 issues•00 pull requests•Updated Apr 6, 2026Apr 6, 2026

• cider.breedbase.org

  Public
  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 24, 2026Mar 24, 2026

• Weather

  Public
  CSS

  •

  MIT License

  •11 fork•00 stars•77 issues•00 pull requests•Updated Mar 17, 2026Mar 17, 2026

• apollo.breedbase.org

  Public
  docker based apollo instance

  00 forks•00 stars•00 issues•00 pull requests•Updated Mar 11, 2026Mar 11, 2026

• cxgn-corelibs

  Public
  Various Modules relating to SGN and Breedbase

  perl

  perl

  Perl

  •1414 forks•1111 stars•33 issues•22 pull requests•Updated Mar 4, 2026Mar 4, 2026

• bio-chado-schema

  Public
  A standard DBIx::Class layer for the Chado database schema. Bootstrapped and updated using DBIx::Class::Schema::Loader.

  Perl

  •99 forks•33 stars•00 issues•00 pull requests•Updated Feb 27, 2026Feb 27, 2026

• perl-local-lib

  Public
  Git repository for Perl local-lib for faster installs (eg. Dockerfiles)

  Perl

  •11 fork•00 stars•00 issues•11 pull request•Updated Feb 24, 2026Feb 24, 2026

• erysimum

  Public
  Website for Erysimum genomes

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 6, 2026Feb 6, 2026

• milkweed

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Feb 6, 2026Feb 6, 2026

• solgenomics

  Public
  The mason components needed to run the solgenomics.net website

  MIT License

  •00 forks•11 star•11 issue•00 pull requests•Updated Feb 2, 2026Feb 2, 2026

• gbsappui

  Public
  A user interface for GBSapp that can be integrated into Breedbase

  Perl

  •

  MIT License

  •00 forks•00 stars•1717 issues•00 pull requests•Updated Dec 22, 2025Dec 22, 2025

• fernbase

  Public
  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 7, 2025Dec 7, 2025

• nicotianabase

  Public
  Nicotiana base

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 4, 2025Dec 4, 2025

• musabase

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Nov 19, 2025Nov 19, 2025

• Tea

  Public
  code and database for the expression query, mining, analysis, and visualization tools

  HTML

  •

  MIT License

  •55 forks•88 stars•2020 issues•00 pull requests•Updated Nov 12, 2025Nov 12, 2025

• crispget

  Public template
  HTML

  •

  MIT License

  •00 forks•00 stars•11 issue•00 pull requests•Updated Oct 21, 2025Oct 21, 2025

• VIGS

  Public
  Stand Alone version of SGN VIGS Tool

  HTML

  •

  MIT License

  •33 forks•44 stars•00 issues•00 pull requests•Updated Oct 16, 2025Oct 16, 2025

• cannabase

  Public
  C. sativa base

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 15, 2025Oct 15, 2025

• yambase

  Public
  web interface for Yambase database

  00 forks•00 stars•00 issues•00 pull requests•Updated Oct 15, 2025Oct 15, 2025

• sweetpotatobase

  Public
  Web interface for SweetPotatoBase website

  00 forks•00 stars•00 issues•00 pull requests•Updated Oct 15, 2025Oct 15, 2025

• okra.breedbase.org

  Public
  PLpgSQL

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 26, 2025Sep 26, 2025

• cea

  Public
  Cassava Expression Atlas

  11 fork•00 stars•11 issue•00 pull requests•Updated Sep 19, 2025Sep 19, 2025

• cotton

  Public
  PLpgSQL

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 17, 2025Sep 17, 2025

• courtney.breedbase.org

  Public
  a breedbase instance for Lance of Giovannoni lab

  PLpgSQL

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 16, 2025Sep 16, 2025