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@fabrylab Biophysics Group at the University of Erlangen-Nuremberg

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    23 repositories

    • AntarcticFurSealDensity

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 20, 2026Apr 20, 2026

    • AntarcticFurSealPredatorPrey

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Mar 11, 2026Mar 11, 2026

    • clickpoints

      Public
      Click Points is a program written in the Python programming language, which serves on the one hand as an image viewer and on the other hand as an data display a…
      Python
      •
      GNU General Public License v3.0
      •6•17•3•7•Updated Feb 11, 2026Feb 11, 2026

    • shear_flow_deformation_cytometer

      Public
      Python
      •
      GNU General Public License v3.0
      •0•6•1•0•Updated Feb 5, 2026Feb 5, 2026

    • immune_cell_migration

      Public
      Python framework for analyzing high-throughput 3D migration assays.
      Python
      •
      MIT License
      •1•0•0•0•Updated Feb 4, 2026Feb 4, 2026

    • Bronchoscopy

      Public
      Numerical simulation tool for predicting the impact of bronchoscopy on ventilation, supporting clinical decision-making by guiding ventilator settings to reduce…
      HTML
      •
      MIT License
      •0•0•0•0•Updated May 7, 2025May 7, 2025

    • MP_ventilation

      Public
      script to compute the ventilator parameters (VT, rr, I:E ratio) that minimize mechanical power for a given alveolar minute ventilation
      Python
      •
      Other
      •0•2•0•0•Updated Dec 5, 2024Dec 5, 2024

    • YoloViewer

      Public
      Python
      •0•0•0•0•Updated May 17, 2024May 17, 2024

    • pyTFM

      Public
      2 dimensional particle image velocimetry, traction force microscopy and monolayer stress microscopy
      cellmechanicsstresses
      cellmechanicsstressestraction-force-microscopymonolayer-stress-microscopytraction-force
      Python
      •
      GNU General Public License v3.0
      •8•25•4•1•Updated Dec 19, 2023Dec 19, 2023

    • Deformation_Cytometer

      Public
      a low cost easy to use deformation cytometer
      Jupyter Notebook
      •1•1•0•1•Updated Mar 25, 2023Mar 25, 2023

    • spheroid-tracking

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 29, 2022Jul 29, 2022

    • 2Camera_Qt

      Public
      Python
      •0•0•0•0•Updated Dec 7, 2021Dec 7, 2021

    • example_data_for_pyTFM

      Public
      example data for pyTFM
      Python
      •0•0•1•0•Updated May 10, 2021May 10, 2021

    • localAlignement

      Public
      A clickpoints addon to analyze the alignement of vector fields close to manually drawn lines
      Python
      •0•0•0•0•Updated Jan 27, 2021Jan 27, 2021

    • SegmenationEvaluation

      Public
      clickpoints addon to compare two segmentation algorithms
      Python
      •0•0•0•0•Updated Jan 21, 2021Jan 21, 2021

    • tracking_andreas

      Public
      collection of tracking scripts by Andreas
      Python
      •0•0•0•0•Updated Dec 18, 2020Dec 18, 2020

    • spheroid_invasion_assay

      Public
      Invasiveness of 3D spheroids using the radial cell density profile.
      Python
      •0•1•0•0•Updated Nov 9, 2020Nov 9, 2020

    • pengu_track

      Public
      Master thesis Alexander Winterl, tracking algorithms for penguins and cells.
      trackingmaster-thesispenguin
      trackingmaster-thesispenguin
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 3, 2020Nov 3, 2020

    • fiber-orientation

      Public
      Evaluates fiber orientation
      Jupyter Notebook
      •0•1•0•0•Updated Sep 29, 2020Sep 29, 2020

    • Bioprinter

      Public
      scripts to use the bioprinter
      Python
      •0•0•0•0•Updated Jul 5, 2020Jul 5, 2020

    • 3D_piv_example_data

      Public
      A simple data set for 3D Particel Image Veolcimetry
      1•3•0•0•Updated Jun 19, 2020Jun 19, 2020

    • clickpointsexamples

      Public
      Some example datasets for ClickPoints
      Python
      •0•0•0•0•Updated Jun 16, 2020Jun 16, 2020

    • Classic-Invasion-Assay

      Public
      Analysis of cingle cell invasion depth of cells beeing seeded of top of a (collagen-)gel. Cells need to be imaged with BF and Fluo (Hoechst).
      Python
      •0•0•0•0•Updated Mar 6, 2020Mar 6, 2020
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