All

28 repositories

GeneRegulatorySystems.jl
Public
A package to construct models of single-cell gene regulatory systems and orchestrate their simulation.
Julia
•
GNU Affero General Public License v3.0
•1•2•0•0•Updated Apr 21, 2026Apr 21, 2026
GeneRegulatorySystems-App
Public
Graphical User Interface for GeneRegulatorySystems.jl
TypeScript
•0•2•0•0•Updated Apr 21, 2026Apr 21, 2026
diamond
Public
Accelerated BLAST compatible local sequence aligner.
C++
•
GNU General Public License v3.0
•191•0•0•0•Updated Mar 31, 2026Mar 31, 2026
orthologr
Public
Genome wide orthology inference and dNdS estimation
r genomics species
r genomics species blast comparative-genomics proteome blast-searches orthology-inference comparative-genomics-studies sequence-alignments
R
•
GNU General Public License v2.0
•30•101•9•0•Updated Mar 25, 2026Mar 25, 2026
myTAI
Public
Evolutionary Transcriptomics with R
gene-sets r evolution
gene-sets r evolution gene-expression conservation transcriptome evolutionary-transcriptomics evo-devo studies-transcriptomes biological-processes
R
•
GNU General Public License v2.0
•20•48•1•0•Updated Feb 6, 2026Feb 6, 2026
philentropy
Public
Information Theory and Distance Quantification with R
r statistics information-theory
r statistics information-theory similarity-measures distance-measures jensen-shannon-divergence distance-quantification parametric-distributions
R
•
GNU General Public License v2.0
•22•151•6•1•Updated Dec 14, 2025Dec 14, 2025
deepclust-data
Public
R
•
GNU General Public License v3.0
•2•1•0•0•Updated Sep 14, 2025Sep 14, 2025
deepclust_dataretrieval
Public
Cluster Extraction for the DeepClust Database
Python
•
GNU General Public License v2.0
•2•4•0•0•Updated Sep 12, 2025Sep 12, 2025
evoGE
Public
Reproducible scripts for transcriptome evolution study
R
•2•0•0•0•Updated Jun 8, 2025Jun 8, 2025
DevSeqPlant
Public
Web platform for plant evolutionary transcriptomics
PHP
•1•0•0•0•Updated Apr 16, 2025Apr 16, 2025
setga
Public
Small library extracting a minimal subset from a given set that optimizes a given (set of) function(s).
Python
•
MIT License
•0•0•0•0•Updated Jul 18, 2024Jul 18, 2024
edgynode
Public
Statistical assessment and simulated evolution of gene regulatory networks
R
•
GNU General Public License v3.0
•3•4•0•0•Updated May 23, 2024May 23, 2024
deepclust_colabfold
Public
Using the DeepClust Database with ColabFold
Python
•
GNU General Public License v2.0
•1•5•0•0•Updated Apr 11, 2024Apr 11, 2024
uberblast
Public
Seamless Integration of BLAST Alignments in R
GNU General Public License v2.0
•1•0•0•0•Updated Oct 28, 2023Oct 28, 2023
rdiamond
Public
Running DIAMOND2 through R
diamond sequence sequence-alignment
diamond sequence sequence-alignment aligner
R
•
GNU General Public License v2.0
•2•7•0•0•Updated Oct 17, 2023Oct 17, 2023
published_phylomaps
Public
A Collection of Published Phylostratigraphic Maps and Divergence Maps
3•10•1•0•Updated Oct 12, 2023Oct 12, 2023
metablastr
Public
Seamless Integration of BLAST Sequence Searches in R
protein species blast
protein species blast blast-searches nucleotide biological-sequences blasting blastn blast-search sequence-diversity
R
•
GNU General Public License v2.0
•6•30•6•1•Updated Sep 10, 2023Sep 10, 2023
LTRpred
Public
De novo annotation of young retrotransposons
pipeline genome evolution
pipeline genome evolution ltr diversification ltr-transposons ltr-retrotransposons
R
•
GNU General Public License v2.0
•10•47•5•0•Updated Apr 12, 2022Apr 12, 2022
retrocombinator
Public
An R/C++ package for simulating the evolution of retrotransposons over time.
evolution transposition speciation
evolution transposition speciation transposons recombination retrotransposons transposable-element
HTML
•3•4•1•0•Updated Apr 1, 2022Apr 1, 2022
network-inference-pipeline
Public
Applying network-inference-toolbox to RNAseq data
R
•
GNU General Public License v3.0
•0•2•0•0•Updated Nov 3, 2021Nov 3, 2021
network-inference-toolbox
Public
A bunch of network inference utilities packaged as Singularity containers
R
•
GNU General Public License v3.0
•0•1•0•0•Updated Apr 22, 2021Apr 22, 2021
homologr
Public
Homology inference across multiple species
R
•0•1•0•0•Updated Sep 27, 2020Sep 27, 2020
seqstats
Public
Biological Sequence Statistics in R
bioinformatics genomics biological-data-analysis
bioinformatics genomics biological-data-analysis biological-sequences biological-sequence-statistics
R
•1•2•0•0•Updated Apr 26, 2020Apr 26, 2020
patternseqr
Public
Sequence feature detection and classification with R
R
•0•1•0•0•Updated Apr 22, 2020Apr 22, 2020
biodbretrievr
Public
Retrieve and efficiently index entire biological sequence databases
data retrieval biological-sequences
data retrieval biological-sequences biological-data databasestoring
0•0•0•0•Updated Apr 21, 2020Apr 21, 2020
shinyDIAMOND
Public
A web interface to DIAMOND2
0•0•0•0•Updated Apr 18, 2020Apr 18, 2020
biomartr
Public
Genomic Data Retrieval with R
R
•28•0•0•0•Updated Apr 12, 2020Apr 12, 2020
hitparsr
Public
Distributed Databasing of Alignment Hit Data
distributed-database distributed-storage distributed-file-system
distributed-database distributed-storage distributed-file-system
0•0•0•0•Updated Apr 7, 2020Apr 7, 2020

ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Drost Laboratory - Digital Biology Research Group

All

All

28 repositories

GeneRegulatorySystems.jl

GeneRegulatorySystems-App

diamond

orthologr

myTAI

philentropy

deepclust-data

deepclust_dataretrieval

evoGE

DevSeqPlant

setga

edgynode

deepclust_colabfold

uberblast

rdiamond

published_phylomaps

metablastr

LTRpred

retrocombinator

network-inference-pipeline

network-inference-toolbox

homologr

seqstats

patternseqr

biodbretrievr

shinyDIAMOND

biomartr

hitparsr

All

All

Repositories list

28 repositories