All

268 repositories

edu-design-system
Public
Design system for Learning Commons Projects
react design-system style-dictionary
react design-system style-dictionary
TypeScript
•
MIT License
•4•34•1•4•Updated Apr 24, 2026Apr 24, 2026
github-actions
Public
A collection of re-usable GitHub Actions
HCL
•
MIT License
•4•7•1•3•Updated Apr 24, 2026Apr 24, 2026
cryoet-data-portal-backend
Public
CryoET Data Portal API server & ingestion scripts
Python
•
MIT License
•6•6•6•47•Updated Apr 24, 2026Apr 24, 2026
cryoet-data-portal
Public
CryoET Data Portal
TypeScript
•
MIT License
•13•27•265•17•Updated Apr 24, 2026Apr 24, 2026
octopi
Public
Search for Protein 3D Coordinates in CryoET Tomograms
machine-learning deep-learning bayesian-optimization
machine-learning deep-learning bayesian-optimization 3d-segmentation cryo-et 3d-unet volumetric-segmentation
Python
•
Other
•3•8•1•2•Updated Apr 24, 2026Apr 24, 2026
cellxgene
Public
An interactive explorer for single-cell transcriptomics data
visualization dataviz scrna-seq
visualization dataviz scrna-seq scientific transcriptomics
JavaScript
•
MIT License
•150•763•133•2•Updated Apr 24, 2026Apr 24, 2026
camelot
Public
Go
•
MIT License
•0•1•0•1•Updated Apr 24, 2026Apr 24, 2026
idetik
Public
TypeScript
•
MIT License
•0•8•58•7•Updated Apr 23, 2026Apr 23, 2026
single-cell-explorer
Public
Hosted version of cellxgene
TypeScript
•
MIT License
•6•22•61•7•Updated Apr 23, 2026Apr 23, 2026
aws-oidc
Public
AWS OIDC Federation
Go
•
MIT License
•5•20•0•3•Updated Apr 23, 2026Apr 23, 2026
single-cell-data-portal
Public
The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.
TypeScript
•
MIT License
•15•91•252•20•Updated Apr 23, 2026Apr 23, 2026
czid-workflows
Public
Portable WDL workflows for CZ ID production pipelines
Python
•
MIT License
•13•51•5•15•Updated Apr 23, 2026Apr 23, 2026
miniwdl
Public
Workflow Description Language developer tools & local runner
wdl workflow-description-language
wdl workflow-description-language
Python
•
MIT License
•65•202•138•14•Updated Apr 23, 2026Apr 23, 2026
go-misc
Public
miscellaneous go code
Go
•
MIT License
•3•7•0•2•Updated Apr 22, 2026Apr 22, 2026
argo-helm-charts
Public
Go Template
•
MIT License
•0•0•0•9•Updated Apr 22, 2026Apr 22, 2026
cztack
Public
The CZI infrastructure stack.
HCL
•
MIT License
•24•70•0•1•Updated Apr 22, 2026Apr 22, 2026
alhazen
Public
AI agents + toolkits for scientific knowledge
scientific-knowledge-engineering landscape-analysis large-language-models
scientific-knowledge-engineering landscape-analysis large-language-models
Jupyter Notebook
•
MIT License
•3•40•1•3•Updated Apr 21, 2026Apr 21, 2026
argus-artifacts
Public
MIT License
•0•1•0•0•Updated Apr 21, 2026Apr 21, 2026
homebrew-tap
Public
Ruby
•2•3•2•0•Updated Apr 21, 2026Apr 21, 2026
single-cell-curation
Public
Code and documentation for the curation of cellxgene datasets
Python
•
MIT License
•31•54•23•2•Updated Apr 20, 2026Apr 20, 2026
fogg
Public
Manage Infrastructure as Code with less pain.
infrastructure terraform infrastructure-as-code
infrastructure terraform infrastructure-as-code
Go
•
MIT License
•20•307•2•3•Updated Apr 20, 2026Apr 20, 2026
full-text-mining-ner
Public
Open Source Code for Extraction of Methods and Datasets from Biomedical Papers
Python
•
MIT License
•3•5•1•2•Updated Apr 18, 2026Apr 18, 2026
py2rely
Public
Tools for Running Relion5 Sub-Tomogram Refinement Through CLI
relion cryo-et
relion cryo-et
Python
•
Other
•1•3•0•2•Updated Apr 16, 2026Apr 16, 2026
sci-components
Public
2021 Science Design System Component Library
react css theme
react css theme design-system
TypeScript
•
MIT License
•7•33•108•1•Updated Apr 16, 2026Apr 16, 2026
cellxgene-ontology-guide
Public
Notebook guide: https://github.com/chanzuckerberg/cellxgene-ontology-guide/blob/main/api/python/notebooks/Python%20API.ipynb
Python
•
MIT License
•1•9•11•8•Updated Apr 13, 2026Apr 13, 2026
create-sds-app
Public template
Repo template for npx create-sds-app
TypeScript
•
MIT License
•1•4•0•5•Updated Apr 11, 2026Apr 11, 2026
blessclient
Public
Go client to negotiate SSH certificates
ssh certificate rsync
ssh certificate rsync scp ssh-agent czi
Go
•
MIT License
•13•64•8•2•Updated Apr 10, 2026Apr 10, 2026
galago
Public
Interpretation aids for genomic epidemiology
TypeScript
•
MIT License
•3•9•63•10•Updated Apr 8, 2026Apr 8, 2026
galago-labs
Public
Development fork for Galago -- see github.com/chanzuckerberg/galago for stable version
TypeScript
•
MIT License
•3•0•0•10•Updated Apr 8, 2026Apr 8, 2026
czid-cli
Public
CZID (formerly IDseq) infectious disease command-line interface
cli genomics idseq
cli genomics idseq
Go
•
MIT License
•3•21•1•1•Updated Apr 8, 2026Apr 8, 2026

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Chan Zuckerberg Initiative

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268 repositories

edu-design-system

github-actions

cryoet-data-portal-backend

cryoet-data-portal

octopi

cellxgene

camelot

idetik

single-cell-explorer

aws-oidc

single-cell-data-portal

czid-workflows

miniwdl

go-misc

argo-helm-charts

cztack

alhazen

argus-artifacts

homebrew-tap

single-cell-curation

fogg

full-text-mining-ner

py2rely

sci-components

cellxgene-ontology-guide

create-sds-app

blessclient

galago

galago-labs

czid-cli

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Repositories list

268 repositories