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    65 repositories

    • on-device-LLM

      Public
      TeX
      •
      Apache License 2.0
      •2•2•0•1•Updated Apr 23, 2026Apr 23, 2026

    • genomic-FM

      Public
      A Large-Scale Dataset and Framework for Genomic Foundation Model Benchmarking
      benchmarkinggenomicsrepresentation-learning
      benchmarkinggenomicsrepresentation-learninggenetic-variantsfoundation-models
      Python
      •4•32•1•0•Updated Apr 19, 2026Apr 19, 2026

    • CryoDINO

      Public
      3DINO pretraining on Cryo-electron tomograms with fine-tuning for particle and organelle identification using cutting-edge decoders. …
      Jupyter Notebook
      •
      Other
      •0•0•0•0•Updated Apr 14, 2026Apr 14, 2026

    • JSC

      Public
      Joint segmentation and clasification for 3D medical images
      Python
      •
      Apache License 2.0
      •0•9•0•0•Updated Apr 10, 2026Apr 10, 2026

    • DELBERT

      Public
      DELBERT: Fingerprint Language Modeling for Generalizable Hit Discovery in DNA-Encoded Libraries
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 5, 2026Apr 5, 2026

    • MedRAX2

      Public
      MedRAX-2
      Python
      •
      Apache License 2.0
      •199•23•2•1•Updated Apr 3, 2026Apr 3, 2026

    • BioReason-Pro

      Public
      BioReason-Pro: Advancing Protein Function Prediction with Multimodal Biological Reasoning
      Jupyter Notebook
      •15•110•3•0•Updated Apr 1, 2026Apr 1, 2026

    • BioReason

      Public
      BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model | NeurIPS '25
      bioinformaticscomputational-biologydna
      bioinformaticscomputational-biologydnareasoningfoundation-modelslarge-language-modelsgrpo
      Jupyter Notebook
      •
      Apache License 2.0
      •53•387•8•0•Updated Mar 27, 2026Mar 27, 2026

    • MorphoDiff

      Public
      MorphoDiff is a diffusion based generative pipeline to predict high-resolution cell morphological responses under different conditions based on perturbation enc…
      Python
      •
      Apache License 2.0
      •6•33•0•0•Updated Mar 20, 2026Mar 20, 2026

    • FastSegmentator

      Public
      Python
      •
      Apache License 2.0
      •0•4•0•0•Updated Feb 24, 2026Feb 24, 2026

    • EchoJEPA

      Public
      EchoJEPA: A Latent Predictive Foundation Model for Echocardiography
      Python
      •
      Apache License 2.0
      •45•294•7•0•Updated Feb 8, 2026Feb 8, 2026

    • ecg-fm

      Public
      An electrocardiogram analysis foundation model.
      machine-learninghealthcaretransformer
      machine-learninghealthcaretransformerelectrocardiogramfoundation-modelsmimic-iv-ecgphysionet2021
      Python
      •
      MIT License
      •27•267•1•0•Updated Jan 14, 2026Jan 14, 2026

    • nnClass

      Public
      Python
      •
      Apache License 2.0
      •0•7•0•0•Updated Dec 11, 2025Dec 11, 2025

    • Orthrus

      Public
      Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifically designed for long-se…
      Python
      •
      MIT License
      •19•107•1•0•Updated Dec 10, 2025Dec 10, 2025

    • HIMF-Surv

      Public
      Hierarchical Intra- and Inter-Modality Fusion for Multimodal Survival Prediction in Prostate Cancer
      Python
      •
      Apache License 2.0
      •0•2•0•0•Updated Dec 8, 2025Dec 8, 2025

    • Classifier3D

      Public
      0•0•0•0•Updated Dec 1, 2025Dec 1, 2025

    • scGPT

      Public
      gptsingle-cellfoundation-model
      gptsingle-cellfoundation-model
      Jupyter Notebook
      •
      MIT License
      •329•1.5k•168•9•Updated Nov 12, 2025Nov 12, 2025

    • MedRAX

      Public
      MedRAX: Medical Reasoning Agent for Chest X-ray - ICML 2025
      agentmedicalhealthcare
      agentmedicalhealthcaremedical-imagingchest-xraychest-xraysreasoning-agentlangchainagentic-frameworkagentic-ai
      Python
      •
      Apache License 2.0
      •199•1.1k•2•1•Updated Oct 31, 2025Oct 31, 2025

    • trl

      Public
      Train transformer language models with reinforcement learning.
      Python
      •
      Apache License 2.0
      •2.7k•0•0•2•Updated Sep 15, 2025Sep 15, 2025

    • AMOS-MM-Solution

      Public
      Solution to the AMOS-MM challenge
      Python
      •
      MIT License
      •0•14•2•0•Updated Sep 13, 2025Sep 13, 2025

    • MedSAM2

      Public
      MedSAM2: Segment Anything in 3D Medical Images and Videos
      Python
      •
      Apache License 2.0
      •121•622•12•1•Updated Jul 11, 2025Jul 11, 2025

    • vLLM

      Public
      A high-throughput and memory-efficient inference and serving engine for LLMs
      Python
      •
      Apache License 2.0
      •16k•0•0•0•Updated Jun 13, 2025Jun 13, 2025

    • dnaBLT

      Public
      DNA Byte Latent Transformer.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•4•0•0•Updated Jun 7, 2025Jun 7, 2025

    • Ctrl-DNA

      Public
      Ctrl-DNA: Controllable Cell-Type-Specific Regulatory DNA Design via Constrained RL
      Python
      •
      Apache License 2.0
      •3•18•1•0•Updated May 28, 2025May 28, 2025

    • IntegrAO

      Public
      Integrate Any Omics: Towards genome-wide data integration for patient stratification
      Jupyter Notebook
      •
      MIT License
      •15•59•0•0•Updated May 19, 2025May 19, 2025

    • AGILE

      Public
      AGILE Platform: A Deep Learning-Powered Approach to Accelerate LNP Development for mRNA Delivery
      Jupyter Notebook
      •
      MIT License
      •10•56•4•0•Updated May 16, 2025May 16, 2025

    • MedSAM

      Public
      Segment Anything in Medical Images
      Jupyter Notebook
      •
      Apache License 2.0
      •583•4.2k•13•3•Updated May 7, 2025May 7, 2025

    • MedSAMSlicer

      Public
      3D Slicer Plugin for Segment anything in medical images
      3d-slicer-extension
      3d-slicer-extension
      Python
      •29•291•4•2•Updated Apr 7, 2025Apr 7, 2025

    • scGPT-spatial

      Public
      Jupyter Notebook
      •
      MIT License
      •15•134•10•1•Updated Feb 13, 2025Feb 13, 2025

    • AgentTutorial

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •2•8•0•0•Updated Feb 3, 2025Feb 3, 2025
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