Repositories list

• pori_ipr_api

  Public

  bcgsc/pori_ipr_api’s past year of commit activity
  Integrated Pipeline Reports (IPR) API, the reporting API as part of the PORI platform

  bioinformaticsgenomicspersonalized-medicine+ 1

  bioinformaticsgenomicspersonalized-medicinepori

  JavaScript

  •00 forks•88 stars•00 issues•22 pull requests•Updated Apr 22, 2026Apr 22, 2026

• pori_ipr_client

  Public

  bcgsc/pori_ipr_client’s past year of commit activity
  Integrated Pipeline Reports (IPR) client. The web interface for the reporting application as part of PORI

  bioinformaticsgenomicspersonalized-medicine+ 1

  bioinformaticsgenomicspersonalized-medicinepori

  TypeScript

  •

  GNU General Public License v3.0

  •11 fork•88 stars•00 issues•66 pull requests•Updated Apr 22, 2026Apr 22, 2026

• pori_graphkb_client

  Public

  bcgsc/pori_graphkb_client’s past year of commit activity
  Front-end web client for the GraphKB project

  graphdbknowledge-basegenomic+ 2

  graphdbknowledge-basegenomicpersonalized-medicinepori

  TypeScript

  •

  GNU General Public License v3.0

  •11 fork•99 stars•1414 issues•00 pull requests•Updated Apr 22, 2026Apr 22, 2026

• pori_graphkb_schema

  Public

  bcgsc/pori_graphkb_schema’s past year of commit activity
  Shared package between the API and GUI for GraphKB which holds the schema definitions and schema-related functions

  genomicsgraphdbknowledge-base+ 2

  genomicsgraphdbknowledge-basepersonalized-medicinepori

  TypeScript

  •

  GNU General Public License v3.0

  •00 forks•44 stars•00 issues•11 pull request•Updated Apr 21, 2026Apr 21, 2026

• pori_graphkb_api

  Public

  bcgsc/pori_graphkb_api’s past year of commit activity
  REST API for the GraphKB project

  genomicsgraphdbknowledge-base+ 2

  genomicsgraphdbknowledge-basepersonalized-medicinepori

  JavaScript

  •

  GNU General Public License v3.0

  •11 fork•44 stars•66 issues•22 pull requests•Updated Apr 21, 2026Apr 21, 2026

• pori_python

  Public

  bcgsc/pori_python’s past year of commit activity
  Python

  •

  GNU General Public License v3.0

  •22 forks•00 stars•11 issue•44 pull requests•Updated Apr 20, 2026Apr 20, 2026

• pori_graphkb_loader

  Public

  bcgsc/pori_graphkb_loader’s past year of commit activity
  The Loaders for GraphKB. Imports content from external sources via the GraphKB REST API

  etlpori

  etlpori

  JavaScript

  •

  GNU General Public License v3.0

  •44 forks•66 stars•1111 issues•44 pull requests•Updated Apr 20, 2026Apr 20, 2026

• bcgsc.github.io

  Public

  bcgsc/bcgsc.github.io’s past year of commit activity
  HTML

  •

  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 11, 2026Mar 11, 2026

• pori

  Public

  bcgsc/pori’s past year of commit activity
  Platform for Oncogenomic Reporting and Interpretation (PORI)

  genomicspersonalized-medicinepori

  genomicspersonalized-medicinepori

  Shell

  •

  GNU General Public License v3.0

  •88 forks•3535 stars•88 issues•11 pull request•Updated Jan 10, 2026Jan 10, 2026

• Canadian_Biogenome_Project

  Public

  bcgsc/Canadian_Biogenome_Project’s past year of commit activity
  This repo contains the pipeline used by the Canadian Biogenome Project (http://earthbiogenome.ca) to generate assemblies

  Nextflow

  •11 fork•33 stars•11 issue•11 pull request•Updated Sep 25, 2025Sep 25, 2025

• pori_ipr_python

  Public archive
  [ARCHIVED] Python adapter for generating reports uploaded to IPR using the PORI platform

  deprecated

  deprecated

  Python

  •

  GNU General Public License v3.0

  •11 fork•66 stars•00 issues•00 pull requests•Updated Sep 10, 2025Sep 10, 2025

• pori_graphkb_python

  Public archive
  [ARCHIVED] Python adapter package for querying the GraphKB API

  deprecated

  deprecated

  Python

  •

  GNU General Public License v3.0

  •11 fork•77 stars•00 issues•00 pull requests•Updated Sep 10, 2025Sep 10, 2025

• RICO

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 5, 2025Sep 5, 2025

• variant_support_pipeline

  Public
  Nextflow

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 3, 2025Sep 3, 2025

• long_read_pog

  Public
  Analysis code for a cohort of Nanopore-sequenced tumours.

  HTML

  •

  MIT License

  •11 fork•77 stars•00 issues•11 pull request•Updated Sep 5, 2024Sep 5, 2024

• IMPALA

  Public
  Integrated Mapping and Profiling of Allelically-expressed Loci with Annotations

  bioinformaticscancersnakemake-workflow+ 1

  bioinformaticscancersnakemake-workflowallele-specific-expression

  R

  •

  GNU General Public License v3.0

  •11 fork•33 stars•33 issues•00 pull requests•Updated Oct 31, 2023Oct 31, 2023

• TMBur

  Public
  Derive TMB estimates from whole genome fastq files. Runs alignment and variant calling before reporting a variety of TMB estimates

  Nextflow

  •33 forks•55 stars•22 issues•00 pull requests•Updated Sep 28, 2023Sep 28, 2023

• mavis

  Public
  Merging, Annotation, Validation, and Illustration of Structural variants

  visualizationpythonbioinformatics+ 3

  visualizationpythonbioinformaticsgenomicstranscriptomestructural-variation

  Python

  •

  GNU General Public License v3.0

  •1414 forks•7676 stars•3232 issues•11 pull request•Updated Aug 22, 2023Aug 22, 2023

• pori_graphkb_parser

  Public
  A package for parsing and recreating HGVS-like variant notation used in GraphKB

  genomicsknowledge-basepersonalized-medicine+ 2

  genomicsknowledge-basepersonalized-medicinevariant-notationpori

  TypeScript

  •

  GNU General Public License v3.0

  •00 forks•44 stars•11 issue•00 pull requests•Updated Aug 3, 2023Aug 3, 2023

• mavis_config

  Public
  Workflow configuration validation for MAVIS via snakemake

  Python

  •

  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•11 pull request•Updated Jun 14, 2023Jun 14, 2023

• sqlalchemy_hawq

  Public
  Custom dialect for using SQLAlchemy with a HAWQ database which extends the postgres dialect

  pythonsqlalchemyhawq

  pythonsqlalchemyhawq

  Python

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated May 15, 2023May 15, 2023

• PyVCF

  Public
  A Variant Call Format reader for Python.

  Python

  •

  Other

  •224224 forks•00 stars•00 issues•00 pull requests•Updated Mar 9, 2023Mar 9, 2023

• pori_cbioportal

  Public
  cBioportal adaptor for creating PORI reports in IPR

  genomicspersonalized-medicinepori

  genomicspersonalized-medicinepori

  Python

  •

  GNU General Public License v3.0

  •11 fork•22 stars•00 issues•00 pull requests•Updated Jan 22, 2022Jan 22, 2022

• mirna

  Public
  microRNA profiling pipeline

  Perl

  •4444 forks•8282 stars•44 issues•00 pull requests•Updated Jan 18, 2022Jan 18, 2022

• lcm

  Public
  lcm

  Java

  •00 forks•11 star•11 issue•00 pull requests•Updated Nov 26, 2020Nov 26, 2020

• qupath-annotation-exchange

  Public
  An extension for QuPath for importing JSON annotations made in a GSC internal application

  Java

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jun 12, 2020Jun 12, 2020

• integrative_analysis_chip

  Public
  ChIP-Seq pipeline for integrative analysis

  Python

  •55 forks•00 stars•00 issues•00 pull requests•Updated Oct 1, 2019Oct 1, 2019

• orca

  Public
  :whale: Genomics Research Container Architecture

  R

  •

  GNU General Public License v3.0

  •1313 forks•4848 stars•2121 issues•00 pull requests•Updated Aug 30, 2019Aug 30, 2019

• gum

  Public
  GUM: Group, User Manager for LDAP

  Python

  •

  Other

  •00 forks•22 stars•00 issues•00 pull requests•Updated Sep 14, 2016Sep 14, 2016

• ProbeGenerator

  Public
  Determine the nucleotide sequences of mutations

  Python

  •

  Other

  •11 fork•00 stars•55 issues•00 pull requests•Updated Dec 22, 2014Dec 22, 2014