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    23 repositories

    • phase_behaviors_near_criticality_A1LCD

      Public
      All code and analyses to study near-critical vs off-critical phase behaviors of the prion-like low complexity domain A1-LCD
      C
      •1•0•0•0•Updated Apr 15, 2026Apr 15, 2026

    • FIREBALL

      Public
      A suite of computational tools for constructing, analyzing, and fitting phase diagrams and coil-to-globule transitions.
      Python
      •
      GNU Lesser General Public License v3.0
      •2•3•0•0•Updated Nov 28, 2025Nov 28, 2025

    • LASSI

      Public
      LASSI - Lattice Simulation Engine For Stickers And Spacer Interactions
      C
      •
      GNU General Public License v3.0
      •8•19•3•0•Updated Sep 3, 2025Sep 3, 2025

    • King-etal-Nucleoli

      Public
      This GitHub repository contains the code and data for the manuscript "Macromolecular Condensation Organizes Nucleolar Sub-Phases to Set Up a pH Gradient." Avail…
      biophysicscondensatesnucleolus
      biophysicscondensatesnucleolusphase-separation
      Jupyter Notebook
      •0•4•0•0•Updated Aug 22, 2025Aug 22, 2025

    • metastable-condensates

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Aug 22, 2025Aug 22, 2025

    • MATR3_effective_delta

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Aug 22, 2025Aug 22, 2025

    • microphase-assemblies

      Public
      Python
      •0•0•0•0•Updated Aug 6, 2025Aug 6, 2025

    • Motility

      Public
      Jupyter Notebook
      •0•1•0•0•Updated May 23, 2025May 23, 2025

    • material_properties

      Public
      Data repository and analysis routines used to study material properties of prion-like low-complexity domains as described in https://doi.org/10.1038/s41567-024-…
      MATLAB
      •0•1•0•0•Updated May 4, 2025May 4, 2025

    • Data-and-analysis-for-RNA-Interfaces

      Public
      MATLAB
      •0•2•0•0•Updated Mar 20, 2025Mar 20, 2025

    • n130-liquid-structure

      Public
      Data and analyses scripts used for `doi:10.1038/s41467-024-47602-z`
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Apr 29, 2024Apr 29, 2024

    • Glutamate_vs_Chloride_Clustering

      Public
      Jupyter Notebook
      •0•2•0•0•Updated Apr 19, 2024Apr 19, 2024

    • dynamical-control

      Public
      This GitHub repository contains the code and data for the manuscript "Dynamical control enables the formation of demixed biomolecular condensates" (BioRxiv link…
      condensatescomputational-biophysicsphase-separation
      condensatescomputational-biophysicsphase-separationdynamical-control
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 26, 2023Oct 26, 2023

    • Data-and-Analysis-for-PLCD-Mixtures

      Public
      Data and Analysis code used in the following paper: "Phase Separation of Protein Mixtures is Driven by the Interplay of Homotypic and Heterotypic Interactions"
      Cython
      •0•3•0•0•Updated Aug 13, 2023Aug 13, 2023

    • localCIDER

      Public
      localCIDER - sequence analysis tool for disordered protein sequences
      Python
      •
      GNU General Public License v2.0
      •14•26•2•0•Updated May 15, 2023May 15, 2023

    • Interfacial_Analyses

      Public
      Analysis routines used in the following manuscript https://doi.org/10.1038/s41467-022-35370-7
      Cython
      •0•0•0•0•Updated Nov 26, 2022Nov 26, 2022

    • qc-CAMPARI

      Public
      Fortran
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Jan 5, 2022Jan 5, 2022

    • colgrab

      Public
      Script which extracts a number of columns from a text file while ignoring headers. Basically awk for those who can't use awk.
      Python
      •
      GNU General Public License v2.0
      •0•1•0•0•Updated Oct 28, 2021Oct 28, 2021

    • PLCD-Data-Repository-and-Analysis-Routines

      Public
      Data repository and analysis routines used to study prion-like low-complexity domains as described in https://www.biorxiv.org/content/10.1101/2021.01.01.425046v…
      Python
      •0•1•0•0•Updated Oct 5, 2021Oct 5, 2021

    • damfret_classifier

      Public
      This is a Python package for classifying DAmFRET data based on supervised learning. The data can also be analyzed to allow mechanistic inferences regarding nucl…
      proteinssupervised-learningclassification-algorithm
      proteinssupervised-learningclassification-algorithmnucleationphase-separationmechanistic-inferenceordered-assemblies
      Python
      •0•2•0•0•Updated Mar 25, 2021Mar 25, 2021

    • simprep

      Public
      correct salt concentration for a CAMPARI simulation correct salt concentration for a CAMPARI simulation
      Python
      •
      GNU General Public License v2.0
      •2•1•0•0•Updated Jan 24, 2020Jan 24, 2020

    • Pyvolution

      Public
      Python
      •0•1•0•0•Updated Jun 13, 2014Jun 13, 2014

    • visualizeCampari

      Public
      A set of scripts to automatically visualize the data output from CAMPARI in a generalized format.
      MATLAB
      •0•0•0•0•Updated May 13, 2014May 13, 2014
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