version 1.0.00
Changes:
- doc: Add definition files for singularity containers with BART
- doc: Add documentation of performance options
- doc: Add documentation for singularity container
- doc: Add documentation for environment variables
- affinereg (new): affine registration
- bloch (new): Bloch simulation (work-in-progress)
- coils (new): simulate coil sensitivity maps
- compress (new): compress data using binary mask
- cunet (new): conditional U-Net
- denoise (new): denoising tool
- estmotions (new): non-rigid registration
- estscaling (new): estimate a scaling factor from k-space center
- gmm (new): Gaussian-Mixture models
- grid (new): compute Cartesian grids
- grog (new): GROG calibration and gridding (currently only radials)
- hist (new): compute histograms
- interpolate (new): interpolate and image after transformation
- mobasig (sig): forward calculation of physical signal models
- multicfl (new): combine/split multi-cfl files
- nlinvnet (new): NLINV-Net reconstruction and training
- ncalib (new): sensitivity calibration using NLINV
- phasepole (new): tool to detect phase poles
- pulse (new): compute radio-frequency pulse shapes
- raga (new): tool to compute RAGA indices
- rovir (new): coil compression with region optimization
- sample (new): sample generative score-based models
- seq (new): compute MRI sequences
- stl (new): read/write STL files
- unwrap (new): simply unwrapping tool
- tee (new): copy stdin to file and stdout
- toraw (new): create raw data files
- trajcor (new): retrospectively correct trajectory based on gradient delays
- mat2cfl: removed.
- bin: zero-fill option
- bin: stream support
- calc: new function: round
- ccapply: realtime geometric coil compression
- conway: stream support
- copy: stream support
- copy: support for reordering of dimensions
- epg: make refocusing FA accessible from CLI
- ecalib: use Nyström approximation
- ecalib: economic mode for 3D coils
- fovshift: pass shift as file
- invert: option for regularization
- join: stream support
- mandelbrot: stream support
- moba: IR-MECO reconstruction
- moba: finalize transparent gpu support in moba
- moba: change scaling and command line for T2 moba to be consistent with mobafit
- mobafit: CEST fitting
- mobafit: simulation based fitting (Bloch + Bloch-McConnell)
- nnet: support for nnU-Net for segmenation
- nlinv: basis support, temporal regularization, builtin nufft
- nlinv: stream support
- nufft: fix compatibility to v0.8.00
- pics: use of prox in last iteration of FISTA
- pics: (TE-)ASL reconstruction
- pics: Euler-Maruyama
- reconet: fix compatibility to v0.8.00
- show: support for printing real part and index
- signal: enable the input of fat fraction
- signal: generating function-based FSE model
- signal: buxton model
- signal: option to toggle short TR approximation
- sim: CEST sequence
- traj: option to create RAGA index file
- twixread: optional read PMU signal
- twixread: read noise scans
- rtreco.sh: new script for realtime reconstruction
- library: remove divergence free wavelets
- library (num): stable and improved random number generation with Philox-4x32
- library (num): GPU support for gaussian random numbers
- library (num): rename md_(de)compress -> md_mask_(de)compress
- library (num): new functions: md_(z)round(2) functions, md_zsetnanzero(2)
- library (num): MPI support for md_copy with strides, and md_zadd2
- library (num): new LAPACK wrappers (svd, eigenvalues, solvers)
- library (num): matrix logarithm of upper triangular matrix
- library (num): matrix square root of triangular matrix
- library (num): complex support for matrix exponentials
- library (num): new special functions: Legendre polynomials
- library (num): new special functions: simplified hyp2f1 function
- library (num): new special functions: approximation of gamma function
- library (num): Gauss-Legendre quadrature
- library (num): Crank Nicolson
- library (num): functions for Gaussian mixture models
- library (ismrmd): new functions to parse ismrmrd streams
- library (iter): Euler Mayurama
- library (linop): shift, slice, hankelization, reshape with flags
- library (nn): cast linop to nn
- library (nn): support for leaky ReLU
- library (nn): normalization layer
- library (nn): normalized loss
- library (nlops): checkpointing container
- general: move to codeberg
- general: remove TOOLBOX_PATH and DEBUG_LEVEL (use the new ones with BART_ prefix)
- general: stream protocol implementation + tests
- general: experimental support for delayed computation
- general: Windows DLLs