Rose-et-al.-2026

RNA-seq analysis for Tregs paper collaboration with Paul Ashwood

3'Tag-seq unix scrips:

• Master_QuantSeqAnalysis.sh
• umi2index
• bbduk.sh

Limma-voom pipelines for differential gene expression analysis for each brain region:

• LimmaVoom_DE_RNAseq_CB_sexlitter.R
• LimmaVoom_DE_RNAseq_FC_sexlitter.R
• LimmaVoom_DE_RNAseq_FC_sexlitter_removeP30.R
• LimmaVoom_DE_RNAseq_HC_sexlitter.R

Comparisons across differential gene expression lists for each brain region:

• DEGcomparisons.R

WGCNA analysis:

• WGCNA_allconditions.R