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[BUG]: background channel is required even when skip_classification=True (single-channel flow breaks)

bugSomething isn't workingSomething isn't working

Status: Open.

#605 In brainglobe/cellfinder;

· ishansurdi opened on Mar 17, 2026

Unused global variables in cellfinder detection?

Status: Open.

#601 In brainglobe/cellfinder;

· alessandrofelder opened on Mar 12, 2026

Explore how data augmentation affects training

enhancementNew feature or requestNew feature or request

Status: Open.

#587 In brainglobe/cellfinder;

· adamltyson opened on Feb 3, 2026

[Optimsation] Vectorised binning

enhancementNew feature or requestNew feature or request

Status: Open.

#584 In brainglobe/cellfinder;

· HARSHDIPSAHA opened on Jan 24, 2026

[BUG] Spike in memory usage end of cellfinder inference phase

bugSomething isn't workingSomething isn't working

Status: Open.

#555 In brainglobe/cellfinder;

· marcodallavecchia opened on Aug 12, 2025

Editable install reports incorrect version

bugSomething isn't workingSomething isn't working

Status: Open.

#551 In brainglobe/cellfinder;

· matham opened on Jun 23, 2025

[Feature] make cellfinder main functions' arguments keyword-only

enhancementNew feature or requestNew feature or request

Status: Open.

#550 In brainglobe/cellfinder;

· alessandrofelder opened on Jun 23, 2025

Napari saving training data shows done before actually done

bugSomething isn't workingSomething isn't working

Status: Open.

#548 In brainglobe/cellfinder;

· matham opened on Jun 10, 2025

A different tile thresholding strategy for CFOS-type data: can this be its own preprocessing step (local contrast enhancement)

Status: Open.

#541 In brainglobe/cellfinder;

· alessandrofelder opened on Jun 6, 2025

automate evaluation as far as possible, so results can be reported in a standard way at each PR

Status: Open.

#538 In brainglobe/cellfinder;

· alessandrofelder opened on Jun 6, 2025

Benchmarking and validation functionality to evaluate cellfinder, as semi-automated high-level integration tests

Status: Open.

#537 In brainglobe/cellfinder;

· alessandrofelder opened on Jun 6, 2025

Document a list of real-life, diverse(CFOS and rabies-tracing) test datasets that allow us to evaluate correctness and performance of cellfinder

Status: Open.

#536 In brainglobe/cellfinder;

· alessandrofelder opened on Jun 6, 2025