chore: upgrade dependencies (canary)

[ParticularlyPythonicBS]

includes updated urllib 3 to mitigate urllib3: Decompression-bomb safeguards bypassed in parts of the streaming API

Summary by CodeRabbit

• Chores
  • Updated all development and runtime dependencies to their latest stable versions, including core libraries and build tools. These updates include security patches, performance improvements, and enhanced ecosystem compatibility.

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.

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[coderabbitai]

Walkthrough

This pull request regenerates and updates pinned Python dependencies in both requirements-dev.txt and requirements.txt via uv export. The changes refresh version pins and corresponding hash digests across 29 distinct packages, including addition of ast-serialize to development dependencies.

Changes

Dependency Updates

Layer / File(s)	Summary
Dev Dependencies requirements-dev.txt	ast-serialize is added as a new pinned dev dependency. Twenty-two existing dev packages are updated with version and hash bumps: certifi, click, coverage, filelock, gurobipy, identify, librt, matplotlib, mdit-py-plugins, mypy, packaging, pathspec, pre-commit, python-discovery, ruff, sphinxcontrib-bibtex, sphinxcontrib-mermaid, tomlkit, typer, types-deprecated, types-networkx, tzdata, urllib3, and virtualenv.
Production Dependencies requirements.txt	Seven production packages are updated with version and hash bumps: click (8.3.2→8.3.3), markdown-it-py (4.0.0→4.2.0), matplotlib (3.10.8→3.10.9), packaging (26.0→26.2), tomlkit (0.14.0→0.15.0), typer (0.24.1→0.25.1), and tzdata (2026.1→2026.2).

Estimated code review effort

🎯 1 (Trivial) | ⏱️ ~3 minutes

Possibly related PRs

• TemoaProject/temoa#298: Adds a Dependency Canary workflow that regenerates and updates requirements.txt and requirements-dev.txt via uv lock/uv pip compile.
• TemoaProject/temoa#313: Also updates pinned development dependencies including mypy in requirements-dev.txt.

Suggested labels

Maintenance, dependency-canary

🚥 Pre-merge checks | ✅ 5

✅ Passed checks (5 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title 'chore: upgrade dependencies (canary)' accurately describes the main change—updating development and production dependencies, with the PR description confirming this addresses a security vulnerability in urllib3.
Docstring Coverage	✅ Passed	No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.
Linked Issues check	✅ Passed	Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check	✅ Passed	Check skipped because no linked issues were found for this pull request.

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✨ Finishing Touches

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch unstable

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[coderabbitai]

Actionable comments posted: 1

🤖 Prompt for all review comments with AI agents

Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

Inline comments:
In `@requirements-dev.txt`:
- Around line 711-742: The PR bumps mypy to mypy==2.0.0 which introduces
breaking default changes; update project mypy configuration and CI to target
Python >=3.10 and explicitly set or adjust the affected flags: add explicit
settings for --local-partial-types (set false if you relied on old behavior) and
--strict-bytes (set false if you need previous bytearray/memoryview behavior),
replace any uses of --allow-redefinition with the renamed
--allow-redefinition-old or update callers, and review uses of
--ignore-missing-imports (now applies consistently to bundled stubs); also
confirm ast-serialize==0.3.0 is kept as the required mypy dependency.

🪄 Autofix (Beta)

Fix all unresolved CodeRabbit comments on this PR:

• Push a commit to this branch (recommended)
• Create a new PR with the fixes

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ℹ️ Review info

⚙️ Run configuration

Configuration used: Path: .coderabbit.yaml

Review profile: ASSERTIVE

Plan: Pro

Run ID: 5afc811e-7071-48da-82de-39c45d1a0c1a

📥 Commits

Reviewing files that changed from the base of the PR and between f4efb3a and 6b754b7.

⛔ Files ignored due to path filters (1)

• uv.lock is excluded by !**/*.lock

📒 Files selected for processing (2)

• requirements-dev.txt
• requirements.txt