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BaseRecording has shift_times (#3509). BaseSorting got get_start_time/get_end_time in #4525 but no way to shift the timing through the public API. This PR adds shift_times to BaseSorting.
shift_times on a sorting never mutates the registered recording. After #4525, register_recording copies the recording's start time into each segment's _t_start, so _t_start represents the effective start time of the segment. shift_times(delta) adds delta to _t_start. When a recording is registered, the effective shift relative to the recording is _t_start - recording.get_start_time(); this is 0 right after registration and becomes 5.0 after shift_times(5.0).
sample_index_to_time, time_to_sample_index, get_end_time, and get_times now compose this shift. I also updated the get_unit_spike_train_in_seconds native path (used by NWB extractors) which previously ignored _t_start.
Looks great! I think we should add a check on create_sorting_analyzer that the start times for the recording and sorting match. I can't imagine a situation where you'd want them to not match, but can imagine accidentally shifting them out of sync.
Looks great! I think we should add a check on create_sorting_analyzer that the start times for the recording and sorting match. I can't imagine a situation where you'd want them to not match, but can imagine accidentally shifting them out of sync.
@h-mayorquin LGTM! I agree that the check that @chrishalcrow proposes doesn't hurt :) Can you add it to this PR?
I tried the create_sorting_analyzer improvement suggested by @chrishalcrow but I reverted. There are some design decisions to be made over there (e.g. what happens when an unregistered sorting paired with a non-zero-start recording raise, something that happens on the test) and I think they should be made by someone who users the sorting analyzer more than I do. I will have to get my hands dirty with the analyzer soon and then maybe I can take a stab at that.
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BaseRecordinghasshift_times(#3509).BaseSortinggotget_start_time/get_end_timein #4525 but no way to shift the timing through the public API. This PR addsshift_timestoBaseSorting.shift_timeson a sorting never mutates the registered recording. After #4525,register_recordingcopies the recording's start time into each segment's_t_start, so_t_startrepresents the effective start time of the segment.shift_times(delta)addsdeltato_t_start. When a recording is registered, the effective shift relative to the recording is_t_start - recording.get_start_time(); this is 0 right after registration and becomes 5.0 aftershift_times(5.0).sample_index_to_time,time_to_sample_index,get_end_time, andget_timesnow compose this shift. I also updated theget_unit_spike_train_in_secondsnative path (used by NWB extractors) which previously ignored_t_start.