HD-sEMG decomposition bias Analysis

👥 Contributors

• Renato Watanabe
• Rebeka Batichotti
• Marcos Duarte

📋 Overview

A computational model for motoneuron simulation.

⚙️ Setup Environment

1. Install uv (Dependency Manager)

Get the latest version of uv from the official documentation.

💻Windows Installation

powershell -ExecutionPolicy ByPass -c "irm https://astral.sh/uv/install.ps1 | iex"

🐧 Linux/MacOS Installation

curl -LsSf https://astral.sh/uv/install.sh | sh

2. Install Dependencies

uv sync

2.1 Windows NEURON Installation

Important

On Windows, NEURON must be installed separately as it cannot be installed via pip.

• Download from NEURON Documentation
• Install to the default directory: C:\nrn

Configure the PYTHONPATH environment variable for your IDE:

IDE	Configuration
VSCode	PYTHONPATH environment variable preset automatically
Others	Set PYTHONPATH to: C:\nrn\lib\python

📝 Run Marimo Notebooks

uv run marimo edit NOTEBOOK_NAME.py

Diabetes neuropathy codes and results in diabetes folder

Place the results folder with the data inside the diabetes folder

Simulations can be run with the following command:

./run_trials.sh

The marimo notebook for analysis can be run with the following command:

uv run marimo edit diabetes/analysis.py