moca/.travis.yml at master · saketkc/moca · GitHub

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sudo: false

language: python

matrix:
  include:
  - os: linux
    python: 2.7
    env: REQ_VERSION=2
  - os: linux
    python: 3.5
    env: REQ_VERSION=3
#  - os: osx
#    language: generic
#    env: REQ_VERSION=2
#  - os: osx
#    python: 3.5
#    env: REQ_VERSION=3

addons:
  apt:
    packages:
      - dvipng
      - texlive-latex-base
      - texlive-latex-extra
      - texlive-fonts-recommended
      - texlive-latex-recommended
      - texlive-xetex

after_script:
 - codecov
 - coveralls
 - source deactivate mocadev
 - conda remove --name mocadev --all

before_install:
  - export MINICONDA=$HOME/miniconda
  - export PATH="$MINICONDA/bin:$PATH"
  - hash -r
  - command -v conda >/dev/null || { wget http://repo.continuum.io/miniconda/Miniconda$REQ_VERSION-latest-Linux-x86_64.sh
    -O miniconda.sh; bash miniconda.sh -b -f -p $MINICONDA; }
  - conda config --set always_yes yes
  - conda update conda
  - conda info -a
  - conda install python=$TRAVIS_PYTHON_VERSION
  - conda remove --name mocadev --all || echo 'removed'
  - conda config --add channels conda-forge
  - conda config --add channels defaults
  - conda config --add channels r
  - conda config --add channels bioconda
  - conda create -q -n mocadev python=$TRAVIS_PYTHON_VERSION bedtools pybedtools pandas matplotlib seaborn pybigwig biopython statsmodels future pytest pytest-mpl pytest-cov tqdm
  - source activate mocadev
  - pip install -U olefile pytest-mpl codecov pytest click-help-colors
  - bash travis/install_meme.sh
  - export PATH="$PATH:$HOME/meme_bin/bin"

install:
  - python setup.py install --single-version-externally-managed --record=/tmp/record.txt

script:
  - moca --help
  - py.test --verbose --mpl --cov=moca --cov-config .coveragerc --cov-report term-missing

cache:
  directories:
    - $HOME/miniconda
    - $HOME/meme_bin

deploy:
  true:
    condition: $TRAVIS_PYTHON_VERSION == 2.7
    repo: saketkc/moca
    tags: true
  distributions: sdist bdist_wheel
  password:
    secure: 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
  provider: pypi
  user: saketkc