release updates for w_49 (#59)

MelissaGraham · kadrlica · Leanne Guy · web-flow · commit 885806023ad4 · 2021-12-09T17:12:18.000-08:00
* Update notebook 01 to w_2021_40 * Update notebook 02 to w_2021_40 * Update notebook 03 to w_2021_40 * Update to w_2021_40; more specific warning filters * warning filter * update to w_2021_40 and warnings filter * update to w_2021_40 and warnings * update to w_2021_40 and warnings * WIP * Move rubin imports to first cell * Update to w_40 * Updat formatting of hovertool on images * Migrate to w_40 * Update NB09 for w_40. * update to w_2021_40 and change to warnings * UnitsWarning * update to w_2021_40 and change to warnings * Fix spelling mistake * clear execution * Tickets/preops 624 (#52) * Update README.md Add information from notebooks. Formatting is not consistent between notebooks. Need to figure out how to display this information. There is MORE information about what code/skills are included in the notebooks. For this go around, I just copied the major headings. * Update README.md * Update README.md * Update README.md Added information from NB09 * Update README.md * Update README.md Update to include NB03b and Nb08 information in the front table. Sent a SLACK message for updating the SKILSS IN NOTEBOOKS table with a strategy for how to proceed. * Update README.md Fix punctuation * Update README.md Changed the format for the skills table. I might need a little help filling out the content of the table, level and packages specificially. * Update README.md Added NB08a and NB08b, updated the formatting for skills. * update descriptions for 8a and 8b they were too vague and identical - updated * updated levels for all, skills for 1, 2, and 3 * update to 03b * updated to NB04 * Update README.md Update packages and reformat skills for NB5-9 * minor text updates Co-authored-by: Melissa Graham <melissalynngraham@gmail.com> * update to w_40 (#55) (#56) * Update notebook 01 to w_2021_40 * Update notebook 02 to w_2021_40 * Update notebook 03 to w_2021_40 * Update to w_2021_40; more specific warning filters * warning filter * update to w_2021_40 and warnings filter * update to w_2021_40 and warnings * update to w_2021_40 and warnings * WIP * Move rubin imports to first cell * Update to w_40 * Updat formatting of hovertool on images * Migrate to w_40 * Update NB09 for w_40. * update to w_2021_40 and change to warnings * UnitsWarning * update to w_2021_40 and change to warnings * Fix spelling mistake * clear execution * Tickets/preops 624 (#52) * Update README.md Add information from notebooks. Formatting is not consistent between notebooks. Need to figure out how to display this information. There is MORE information about what code/skills are included in the notebooks. For this go around, I just copied the major headings. * Update README.md * Update README.md * Update README.md Added information from NB09 * Update README.md * Update README.md Update to include NB03b and Nb08 information in the front table. Sent a SLACK message for updating the SKILSS IN NOTEBOOKS table with a strategy for how to proceed. * Update README.md Fix punctuation * Update README.md Changed the format for the skills table. I might need a little help filling out the content of the table, level and packages specificially. * Update README.md Added NB08a and NB08b, updated the formatting for skills. * update descriptions for 8a and 8b they were too vague and identical - updated * updated levels for all, skills for 1, 2, and 3 * update to 03b * updated to NB04 * Update README.md Update packages and reformat skills for NB5-9 * minor text updates Co-authored-by: Melissa Graham <melissalynngraham@gmail.com> Co-authored-by: Alex Drlica-Wagner <kadrlica@fnal.gov> Co-authored-by: Leanne Guy <leanne.guy@lsst.org> Co-authored-by: Jeff Carlin <jcarlin@lsst.org> Co-authored-by: Christina Adair <79288082+ChristinaAdair@users.noreply.github.com> Co-authored-by: Leanne Guy <5301176+leannep@users.noreply.github.com> Co-authored-by: Simon Krughoff <simon.krughoff@gmail.com> Co-authored-by: Alex Drlica-Wagner <kadrlica@fnal.gov> Co-authored-by: Leanne Guy <leanne.guy@lsst.org> Co-authored-by: Jeff Carlin <jcarlin@lsst.org> Co-authored-by: Christina Adair <79288082+ChristinaAdair@users.noreply.github.com> * tickets/PREOPS-880 (#58) * update to w_40 (#55) (#56) (#57) * Update notebook 01 to w_2021_40 * Update notebook 02 to w_2021_40 * Update notebook 03 to w_2021_40 * Update to w_2021_40; more specific warning filters * warning filter * update to w_2021_40 and warnings filter * update to w_2021_40 and warnings * update to w_2021_40 and warnings * WIP * Move rubin imports to first cell * Update to w_40 * Updat formatting of hovertool on images * Migrate to w_40 * Update NB09 for w_40. * update to w_2021_40 and change to warnings * UnitsWarning * update to w_2021_40 and change to warnings * Fix spelling mistake * clear execution * Tickets/preops 624 (#52) * Update README.md Add information from notebooks. Formatting is not consistent between notebooks. Need to figure out how to display this information. There is MORE information about what code/skills are included in the notebooks. For this go around, I just copied the major headings. * Update README.md * Update README.md * Update README.md Added information from NB09 * Update README.md * Update README.md Update to include NB03b and Nb08 information in the front table. Sent a SLACK message for updating the SKILSS IN NOTEBOOKS table with a strategy for how to proceed. * Update README.md Fix punctuation * Update README.md Changed the format for the skills table. I might need a little help filling out the content of the table, level and packages specificially. * Update README.md Added NB08a and NB08b, updated the formatting for skills. * update descriptions for 8a and 8b they were too vague and identical - updated * updated levels for all, skills for 1, 2, and 3 * update to 03b * updated to NB04 * Update README.md Update packages and reformat skills for NB5-9 * minor text updates Co-authored-by: Melissa Graham <melissalynngraham@gmail.com> Co-authored-by: Alex Drlica-Wagner <kadrlica@fnal.gov> Co-authored-by: Leanne Guy <leanne.guy@lsst.org> Co-authored-by: Jeff Carlin <jcarlin@lsst.org> Co-authored-by: Christina Adair <79288082+ChristinaAdair@users.noreply.github.com> Co-authored-by: Leanne Guy <5301176+leannep@users.noreply.github.com> Co-authored-by: Simon Krughoff <simon.krughoff@gmail.com> Co-authored-by: Alex Drlica-Wagner <kadrlica@fnal.gov> Co-authored-by: Leanne Guy <leanne.guy@lsst.org> Co-authored-by: Jeff Carlin <jcarlin@lsst.org> Co-authored-by: Christina Adair <79288082+ChristinaAdair@users.noreply.github.com> Co-authored-by: Leanne Guy <5301176+leannep@users.noreply.github.com> Co-authored-by: Simon Krughoff <simon.krughoff@gmail.com> Co-authored-by: Alex Drlica-Wagner <kadrlica@fnal.gov> Co-authored-by: Leanne Guy <leanne.guy@lsst.org> Co-authored-by: Jeff Carlin <jcarlin@lsst.org> Co-authored-by: Christina Adair <79288082+ChristinaAdair@users.noreply.github.com> * update to w_49 Co-authored-by: Leanne Guy <5301176+leannep@users.noreply.github.com> Co-authored-by: Simon Krughoff <simon.krughoff@gmail.com> Co-authored-by: Alex Drlica-Wagner <kadrlica@fnal.gov> Co-authored-by: Leanne Guy <leanne.guy@lsst.org> Co-authored-by: Jeff Carlin <jcarlin@lsst.org> Co-authored-by: Christina Adair <79288082+ChristinaAdair@users.noreply.github.com> Co-authored-by: Alex Drlica-Wagner <kadrlica@fnal.gov> Co-authored-by: Leanne Guy <leanne.guy@lsst.org> Co-authored-by: Jeff Carlin <jcarlin@lsst.org> Co-authored-by: Christina Adair <79288082+ChristinaAdair@users.noreply.github.com> Co-authored-by: Leanne Guy <5301176+leannep@users.noreply.github.com> Co-authored-by: Simon Krughoff <simon.krughoff@gmail.com>
diff --git a/01_Intro_to_DP0_Notebooks.ipynb b/01_Intro_to_DP0_Notebooks.ipynb
@@ -7,7 +7,7 @@
    "source": [
     "<img align=\"left\" src = https://project.lsst.org/sites/default/files/Rubin-O-Logo_0.png width=250 style=\"padding: 10px\"> \n",
     "<b>Introduction to Jupyter Notebooks for Data Preview 0</b> <br>\n",
-    "Last verified to run on 2021-10-12 with LSST Science Pipelines release w_2021_40 <br>\n",
+    "Last verified to run on 2021-12-08 with LSST Science Pipelines release w_2021_49 <br>\n",
     "Contact author: Melissa Graham <br>\n",
     "Target audience: All DP0 delegates, especially those new to Notebooks. <br>\n",
     "Container Size: medium <br>\n",
diff --git a/02_Intermediate_TAP_Query.ipynb b/02_Intermediate_TAP_Query.ipynb
@@ -6,7 +6,7 @@
    "source": [
     "<img align=\"left\" src = https://project.lsst.org/sites/default/files/Rubin-O-Logo_0.png width=250, style=\"padding: 10px\"> \n",
     "<b>Intermediate TAP Queries for DP0 catalogs </b> <br>\n",
-    "Last verified to run on 2021-10-12 with LSST Science Pipelines release w_2021_40 <br>\n",
+    "Last verified to run on 2021-12-08 with LSST Science Pipelines release w_2021_49 <br>\n",
     "Contact authors: Leanne Guy <br>\n",
     "Target audience: All DP0 delegates. <br>\n",
     "Container Size: medium <br>\n",
diff --git a/03_Image_Display_and_Manipulation.ipynb b/03_Image_Display_and_Manipulation.ipynb
@@ -10,7 +10,7 @@
    "source": [
     "<img align=\"left\" src = https://project.lsst.org/sites/default/files/Rubin-O-Logo_0.png width=250 style=\"padding: 10px\"> \n",
     "<b>Displaying images using the LSST astronomical framework (afw) library</b> <br>\n",
-    "Last verified to run on 2021-10-12 with LSST Science Pipelines release w_2021_40 <br>\n",
+    "Last verified to run on 2021-12-08 with LSST Science Pipelines release w_2021_49 <br>\n",
     "Contact authors: Alex Drlica-Wagner, Jeff Carlin <br>\n",
     "Target audience: All DP0 delegates. <br>\n",
     "Container Size: medium <br>\n",
@@ -536,8 +536,7 @@
     "    coaddId = {'tract': tractInfo.getId(), 'patch': patch, 'band': band}\n",
     "    parameters = {'bbox': bbox}\n",
     "\n",
-    "    cutout_image = butler.get(datasetType, parameters=parameters,\n",
-    "                              immediate=True, dataId=coaddId)\n",
+    "    cutout_image = butler.get(datasetType, parameters=parameters, dataId=coaddId)\n",
     "\n",
     "    return cutout_image"
    ]
diff --git a/03b_Image_Display_with_Firefly.ipynb b/03b_Image_Display_with_Firefly.ipynb
@@ -7,7 +7,7 @@
     "<img align=\"left\" src = https://project.lsst.org/sites/default/files/Rubin-O-Logo_0.png width=250 style=\"padding: 10px\"> \n",
     "<br>\n",
     "<b>Displaying images using Firefly</b> <br>\n",
-    "Last verified to run on 2021-10-12 with LSST Science Pipelines release w_2021_40 <br>\n",
+    "Last verified to run on 2021-12-08 with LSST Science Pipelines release w_2021_49 <br>\n",
     "Contact authors: Jeff Carlin <br>\n",
     "Target audience: All DP0 delegates. <br>\n",
     "Container Size: medium <br>\n",
@@ -97,7 +97,7 @@
     "\n",
     "Once we define a string that contains the data directory, we start the `Butler` instance using the `lsst.daf.butler` library and its `Butler` class. The `Butler` object is initialized with a string containing the data directory we wish to access. Running the cell may take a few moments.\n",
     "\n",
-    "With the `Butler` instance now generated using our data directory, we can retrieve the desired calibrated exposure by telling the butler which filter (\"band\"), CCD (\"detector\", and visit we wish to view. To do this, we define a dictionary with the required information."
+    "With the `Butler` instance now generated using our data directory, we can retrieve the desired calibrated exposure by telling the butler which filter (\"band\"), CCD (\"detector\"), and visit we wish to view. To do this, we define a dictionary with the required information."
    ]
   },
   {
@@ -179,7 +179,8 @@
    "source": [
     "## Improving the image display\n",
     "\n",
-    "The display framework gives you control over the image display to help bring out image details. For example, to make masked regions semi-transparent, so that underlying image features are visible, try:"
+    "The display framework gives you control over the image display to help bring out image details. \n",
+    "For example, to make masked regions semi-transparent, so that underlying image features are visible, try:"
    ]
   },
   {
@@ -249,7 +250,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "In the Firefly viewer tab, the overlays button ![overlays button](http://irsa.ipac.caltech.edu/onlinehelp/finderchart/img/layers.png) on the toolbar gives you detailed control over the mask planes, such as turning individual planes on and off, changing the color and adjusting the transparency. Mask transparency and colors can also be set using `afw.display` commands, for individual planes or for all."
+    "In the Firefly viewer tab, the <a href=\"https://irsa.ipac.caltech.edu/onlinehelp/finderchart/finderchart/img/layers.png\">overlays button</a> on the toolbar gives you detailed control over the mask planes, such as turning individual planes on and off, changing the color and adjusting the transparency. Mask transparency and colors can also be set using `afw.display` commands, for individual planes or for all."
    ]
   },
   {
diff --git a/04_Intro_to_Butler.ipynb b/04_Intro_to_Butler.ipynb
@@ -6,7 +6,7 @@
    "source": [
     "<img align=\"left\" src = https://project.lsst.org/sites/default/files/Rubin-O-Logo_0.png width=250 style=\"padding: 10px\"> \n",
     "<b>Introduction to the LSST data Butler</b> <br>\n",
-    "Last verified to run on 2021-10-12 with LSST Science Pipelines release w_2021_40 <br>\n",
+    "Last verified to run on 2021-12-08 with LSST Science Pipelines release w_2021_49 <br>\n",
     "Contact authors: Alex Drlica-Wagner, Melissa Graham <br>\n",
     "Target audience: All DP0 delegates. <br>\n",
     "Container Size: medium <br>\n",
@@ -744,8 +744,7 @@
     "    coaddId = {'tract': tractInfo.getId(), 'patch': patch, 'band': band}\n",
     "    parameters = {'bbox':bbox}\n",
     "\n",
-    "    cutout_image = butler.get(datasetType, parameters=parameters,\n",
-    "                              immediate=True, dataId=coaddId)\n",
+    "    cutout_image = butler.get(datasetType, parameters=parameters, dataId=coaddId)\n",
     "\n",
     "    return cutout_image"
    ]
diff --git a/05_Intro_to_Source_Detection.ipynb b/05_Intro_to_Source_Detection.ipynb
@@ -6,7 +6,7 @@
    "source": [
     "<img align=\"left\" src = https://project.lsst.org/sites/default/files/Rubin-O-Logo_0.png width=250 style=\"padding: 10px\"> \n",
     "<b>Introduction to Source Detection</b> <br>\n",
-    "Last verified to run on 2021-10-12 with LSST Science Pipelines release w_2021_40 <br>\n",
+    "Last verified to run on 2021-12-08 with LSST Science Pipelines release w_2021_49 <br>\n",
     "Contact author: Alex Drlica-Wagner, Melissa Graham <br>\n",
     "Target audience: All DP0 delegates. <br>\n",
     "Container Size: medium <br>\n",
diff --git a/06_Comparing_Object_and_Truth_Tables.ipynb b/06_Comparing_Object_and_Truth_Tables.ipynb
@@ -8,7 +8,7 @@
     "<img align=\"left\" src = https://project.lsst.org/sites/default/files/Rubin-O-Logo_0.png width=250 style=\"padding: 10px\"> \n",
     "<br>\n",
     "<b>Comparing Object and Truth Tables</b> <br>\n",
-    "Last verified to run on 2021-10-12 with LSST Science Pipelines release w_2021_40 <br>\n",
+    "Last verified to run on 2021-12-08 with LSST Science Pipelines release w_2021_49 <br>\n",
     "Contact author: Jeff Carlin <br>\n",
     "Target audience: All DP0 delegates. <br>\n",
     "Container Size: medium <br>\n",
@@ -406,14 +406,6 @@
     "\n",
     "Congratulations! You have now learned how to compare measurements in the DP0.1 catalogs to the \"true\" simulated properties of objects. Have fun exploring more properties!"
    ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "e3b35b1d",
-   "metadata": {},
-   "outputs": [],
-   "source": []
   }
  ],
  "metadata": {
diff --git a/08a_Interactive_Image_Visualization.ipynb b/08a_Interactive_Image_Visualization.ipynb
@@ -7,7 +7,7 @@
     "<b><img align=\"left\" src = https://project.lsst.org/sites/default/files/Rubin-O-Logo_0.png width=250, style=\"padding: 10px\"> \n",
     "<p><p><p><p><p><p>\n",
     "<b>Interactive Image Visualization</b> <br>\n",
-    "Last verified to run on <b>2021-10-14</b> with LSST Science Pipelines release <b>w_2021_40</b> <br>\n",
+    "Last verified to run on 2021-12-08 with LSST Science Pipelines release w_2021_49 <br>\n",
     "Contact authors: Leanne Guy <br>\n",
     "Target audience: All DP0 delegates. <br>\n",
     "Minimum Container Size: medium <br>\n",
@@ -165,7 +165,8 @@
     "calexpId = {'visit': 192350, 'detector': 175, 'band': 'i'}\n",
     "calexp = butler.get('calexp', calexpId)\n",
     "assert calexp is not None\n",
-    "f\"Visit: {calexp.visitInfo.getExposureId()}, Band:{calexp.getFilterLabel().bandLabel}, Detector: {calexp.detector.getId()}\""
+    "f\"Visit: {calexp.visitInfo.getExposureId()}, Band:{calexp.getFilterLabel().bandLabel}, \\\n",
+    "Detector: {calexp.detector.getId()}\""
    ]
   },
   {
@@ -515,13 +516,6 @@
     " \n",
     " 3. Try using a different stream function to interact with the images in section 3  "
    ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {},
-   "outputs": [],
-   "source": []
   }
  ],
  "metadata": {
diff --git a/08b_Interactive_Catalog_Visualization.ipynb b/08b_Interactive_Catalog_Visualization.ipynb
@@ -7,7 +7,7 @@
     "<b><img align=\"left\" src = https://project.lsst.org/sites/default/files/Rubin-O-Logo_0.png width=250, style=\"padding: 10px\"> \n",
     "<p><p><p><p><p><p>\n",
     "<b>Interactive Catalog Visualization</b> <br>\n",
-    "Last verified to run on <b>2021-10-14</b> with LSST Science Pipelines release <b>w_2021_40</b> <br>\n",
+    "Last verified to run on 2021-12-08 with LSST Science Pipelines release w_2021_49 <br>\n",
     "Contact authors: Leanne Guy <br>\n",
     "Target audience: All DP0 delegates. <br>\n",
     "Minimum Container Size: medium <br>\n",
@@ -432,7 +432,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "Note that these two plots are not linked, they are two independent plots layed out next to each other. Try zooming in on the skyplot, you will notice that the data are not rebinned in the RA Distribution plot.  We will see how to link plots in Section 3. The tools however do apply to both plots. Try modifying both plots and the used the `reset` tool. Notice that both plots are reset to their original states. "
+    "Note that these two plots are not linked, they are two independent plots layed out next to each other. Try zooming in on the skyplot, you will notice that the data are not rebinned in the RA Distribution plot.  We will see how to link plots in Section 3. The tools however do apply to both plots. Try modifying both plots and then use the `reset` tool. Notice that both plots are reset to their original states. "
    ]
   },
   {
diff --git a/09_Single_Star_Lightcurve_with_Butler.ipynb b/09_Single_Star_Lightcurve_with_Butler.ipynb
@@ -8,7 +8,7 @@
     "<img align=\"left\" src = https://project.lsst.org/sites/default/files/Rubin-O-Logo_0.png width=250 style=\"padding: 10px\"> \n",
     "<br>\n",
     "<b>Single Star Lightcurve with the Butler</b> <br>\n",
-    "Last verified to run on 2021-10-13 with LSST Science Pipelines release w_2021_40 <br>\n",
+    "Last verified to run on 2021-12-08 with LSST Science Pipelines release w_2021_49 <br>\n",
     "Contact authors: Melissa Graham, Jeff Carlin <br>\n",
     "Target audience: All DP0 delegates. <br>\n",
     "Container Size: medium <br>\n",

Original file line number	Diff line number	Diff line change
`@@ -7,7 +7,7 @@`
`7`	`7`	`"<img align=\"left\" src = https://project.lsst.org/sites/default/files/Rubin-O-Logo_0.png width=250 style=\"padding: 10px\"> \n",`
`8`	`8`	`"<br>\n",`
`9`	`9`	`"<b>Displaying images using Firefly</b> <br>\n",`
`10`		`- "Last verified to run on 2021-10-12 with LSST Science Pipelines release w_2021_40 <br>\n",`
	`10`	`+ "Last verified to run on 2021-12-08 with LSST Science Pipelines release w_2021_49 <br>\n",`
`11`	`11`	`"Contact authors: Jeff Carlin <br>\n",`
`12`	`12`	`"Target audience: All DP0 delegates. <br>\n",`
`13`	`13`	`"Container Size: medium <br>\n",`
`@@ -97,7 +97,7 @@`
`97`	`97`	`"\n",`
`98`	`98`	"Once we define a string that contains the data directory, we start the `Butler` instance using the `lsst.daf.butler` library and its `Butler` class. The `Butler` object is initialized with a string containing the data directory we wish to access. Running the cell may take a few moments.\n",
`99`	`99`	`"\n",`
`100`		- "With the `Butler` instance now generated using our data directory, we can retrieve the desired calibrated exposure by telling the butler which filter (\"band\"), CCD (\"detector\", and visit we wish to view. To do this, we define a dictionary with the required information."
	`100`	+ "With the `Butler` instance now generated using our data directory, we can retrieve the desired calibrated exposure by telling the butler which filter (\"band\"), CCD (\"detector\"), and visit we wish to view. To do this, we define a dictionary with the required information."
`101`	`101`	`]`
`102`	`102`	`},`
`103`	`103`	`{`
`@@ -179,7 +179,8 @@`
`179`	`179`	`"source": [`
`180`	`180`	`"## Improving the image display\n",`
`181`	`181`	`"\n",`
`182`		`- "The display framework gives you control over the image display to help bring out image details. For example, to make masked regions semi-transparent, so that underlying image features are visible, try:"`
	`182`	`+ "The display framework gives you control over the image display to help bring out image details. \n",`
	`183`	`+ "For example, to make masked regions semi-transparent, so that underlying image features are visible, try:"`
`183`	`184`	`]`
`184`	`185`	`},`
`185`	`186`	`{`
`@@ -249,7 +250,7 @@`
`249`	`250`	`"cell_type": "markdown",`
`250`	`251`	`"metadata": {},`
`251`	`252`	`"source": [`
`252`		- "In the Firefly viewer tab, the overlays button ![overlays button](http://irsa.ipac.caltech.edu/onlinehelp/finderchart/img/layers.png) on the toolbar gives you detailed control over the mask planes, such as turning individual planes on and off, changing the color and adjusting the transparency. Mask transparency and colors can also be set using `afw.display` commands, for individual planes or for all."
	`253`	+ "In the Firefly viewer tab, the <a href=\"https://irsa.ipac.caltech.edu/onlinehelp/finderchart/finderchart/img/layers.png\">overlays button</a> on the toolbar gives you detailed control over the mask planes, such as turning individual planes on and off, changing the color and adjusting the transparency. Mask transparency and colors can also be set using `afw.display` commands, for individual planes or for all."
`253`	`254`	`]`
`254`	`255`	`},`
`255`	`256`	`{`