version in command line argument

Author: rsanchezgarc

deepEMhancer/__init__.py

@@ -0,0 +1 @@
+__version__="0.13"

deepEMhancer/applyProcessVol/cmdParserOptionsDeepEMHancer.py

@@ -1,3 +1,6 @@
+import pkg_resources
+
+import deepEMhancer
 from ..config import BATCH_SIZE
 
 processVolOptions= [
@@ -88,8 +91,12 @@
        "nargs": None,
        "required": False,
        "default": BATCH_SIZE,
-       "help": "Number of cubes to process simultaneously. Lower it if CUDA Out Of Memory error happens and increase it if low GPU performance observed. Default: %(default)s"
+       "help": "Number of cubes to process simultaneously. Lower it if CUDA Out Of Memory error happens and increase it if low GPU performance observed. Warning, for some inputs it may crash if --gpus > . Use only 1 gpus in that case. 1Default: %(default)s"
      }),
 
+    ("--version", {
+        "action": "version",
+        "version": deepEMhancer.__version__, #pkg_resources.require("deepEMhancer")[0].version,
+    }),
 
 ]

setup.py

@@ -1,9 +1,12 @@
+import importlib
 import os
 
 import setuptools
 from setuptools import setup
 
-VERSION="0.13"
+def version():
+    version = importlib.import_module("deepEMhancer").__version__
+    return version
 
 def readme():
   readmePath = os.path.abspath(os.path.join(__file__, "..", "README.md"))
@@ -40,7 +43,7 @@ def readme():
 ]
 
 setup(name='deepEMhancer',
-      version=VERSION,
+      version=version(),
       description='Deep learning for cryo-EM maps post-processing',
       long_description=readme(),
       long_description_content_type="text/markdown",