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    13 repositories

    • jannovar

      Public
      Annotation of VCF variants with functional impact and from databases (executable+library)
      bioinformaticsvcfvariant-annotation
      bioinformaticsvcfvariant-annotationvariant-filtration
      Java
      •
      Other
      •33•65•32•0•Updated Mar 30, 2026Mar 30, 2026

    • Q

      Public
      Q ChIP-seq peak caller
      C++
      •
      Other
      •3•18•1•0•Updated Jul 17, 2024Jul 17, 2024

    • asdpex

      Public
      Java
      •
      Other
      •2•8•1•4•Updated Dec 2, 2022Dec 2, 2022

    • charite.github.io

      Public
      Charité Computational Biology Website
      CSS
      •
      GNU General Public License v2.0
      •7•7•0•0•Updated Jan 15, 2019Jan 15, 2019

    • hyperSMURF

      Public
      Weka implementation of hyperSMURF using EasyEnsemble and SMOTE
      Java
      •
      GNU General Public License v3.0
      •4•2•0•0•Updated Dec 16, 2017Dec 16, 2017

    • topodombar

      Public
      Phenotypic analysis of microdeletions and toplogical chromosome domain boundaries
      Python
      •
      BSD 2-Clause "Simplified" License
      •4•1•0•0•Updated Nov 8, 2017Nov 8, 2017

    • hyperSMURF-tutorial

      Public
      Tutorial how you can the hyperSMURF algorithm in your Java application
      Java
      •1•0•0•0•Updated Apr 24, 2017Apr 24, 2017

    • weka-GWAVA

      Public
      Weka implementation of the GWAVA method from Ritchie, G. R. S., Dunham, I., Zeggini, E., & Flicek, P. (2014). Functional annotation of noncoding sequence varia…
      Java
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 16, 2016Aug 16, 2016

    • chipseqknime

      Public
      KNIME workflow for ChIP-Seq http://charite.github.io/chipseqknime/
      CSS
      •0•0•0•0•Updated Mar 29, 2016Mar 29, 2016

    • jannovar_tutorial

      Public archive
      Jannovar Tutorial Applications
      Java
      •1•1•2•1•Updated May 27, 2015May 27, 2015

    • jannovar_example_app

      Public archive
      Minimal Maven application using Jannovar
      Java
      •0•1•0•0•Updated May 26, 2015May 26, 2015

    • denovocaller

      Public
      Denovo Variation Caller for simple familie trios (mother, father, affected child)
      Java
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jan 16, 2015Jan 16, 2015

    • ngspipeline

      Public
      Our NGS Pipeline using Nextflow
      BSD 3-Clause "New" or "Revised" License
      •3•7•0•0•Updated Dec 9, 2014Dec 9, 2014
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