Repositories list

• navigate

  Public
  navigate - open source light-sheet microscope controls

  microscopylight-sheetlight-sheet-microcopy+ 1

  microscopylight-sheetlight-sheet-microcopylightsheet

  Python

  •

  Other

  •1515 forks•3838 stars•2727 issues•99 pull requests•Updated Apr 17, 2026Apr 17, 2026

• clearex

  Public
  Data Analytics for Light-Sheet Microscopy

  Python

  •

  Other

  •00 forks•00 stars•00 issues•11 pull request•Updated Apr 16, 2026Apr 16, 2026

• altair

  Public
  Modular, high-resolution light-sheet microscopes for accessible 3D subcellular imaging.

  light-sheet-microcopyfluorescence-microscopy

  light-sheet-microcopyfluorescence-microscopy

  HTML

  •

  Other

  •00 forks•11 star•44 issues•00 pull requests•Updated Apr 10, 2026Apr 10, 2026

• pubs

  Public
  Scientific Writing.

  00 forks•00 stars•00 issues•00 pull requests•Updated Apr 7, 2026Apr 7, 2026

• latex-writing-template

  Public template
  TeX

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 6, 2026Apr 6, 2026

• thedeanlab.github.io

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 30, 2026Mar 30, 2026

• CI-Nanocourse

  Public
  Introduction to Python Software Development on GitHub

  Python

  •1616 forks•55 stars•00 issues•22 pull requests•Updated Mar 6, 2026Mar 6, 2026

• .github

  Public
  The Dean Lab at The University of Texas Southwestern Medical Center

  00 forks•00 stars•00 issues•00 pull requests•Updated Dec 12, 2025Dec 12, 2025

• navigate-plugin-template

  Public template
  A forkable template for navigate plugins.

  pluginlight-sheet-microscopy

  pluginlight-sheet-microscopy

  Python

  •

  MIT License

  •33 forks•00 stars•00 issues•00 pull requests•Updated Dec 3, 2025Dec 3, 2025

• Intro-to-Python

  Public
  The Introduction to Python Nanocourse at UTSW

  Jupyter Notebook

  •

  Other

  •11 fork•44 stars•00 issues•00 pull requests•Updated Oct 21, 2025Oct 21, 2025

• dask-nanocourse

  Public
  A Nanocourse Focused on Scalable Data Analysis with Dask

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 6, 2025Aug 6, 2025

• navigate-at-scale

  Public
  A navigate plugin for high-throughput microscopy.

  C

  •

  MIT License

  •11 fork•00 stars•44 issues•00 pull requests•Updated Mar 19, 2025Mar 19, 2025

• navigate-photoactivation

  Public
  A plugin that enables event-driven photoactivation routines with navigate.

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 20, 2024Sep 20, 2024

• navigate-constant-velocity-acquisition

  Public
  A navigate plugin for constant velocity imaging.

  Python

  •

  MIT License

  •00 forks•00 stars•11 issue•00 pull requests•Updated Aug 30, 2024Aug 30, 2024

• navigate-confocal-projection

  Public
  Confocal Projection Plugin

  Python

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 30, 2024Aug 30, 2024

• navigate-mmcore-plugin

  Public
  A plugin for seamless integration of Micro-Manager devices with navigate, enhancing light-sheet microscopy control.

  microscopylight-sheet-microscopy

  microscopylight-sheet-microscopy

  Python

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 12, 2024Aug 12, 2024

• navigate-ilastik-server

  Public
  Ilastik as a server for communication with the ASLM software.

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 5, 2024Apr 5, 2024

• GMIC

  Public
  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 22, 2023Feb 22, 2023