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21 repositories

cryolo
Public
cryolo documentation
Python
•1•13•8•1•Updated Mar 5, 2026Mar 5, 2026
napari-tomotwin
Public
Tool for the work with TomoTwin
Python
•
Mozilla Public License 2.0
•0•5•1•1•Updated Jan 29, 2026Jan 29, 2026
napari-boxmanager
Public
Python
•
Mozilla Public License 2.0
•0•3•12•0•Updated Jan 29, 2026Jan 29, 2026
tomotwin-cryoet
Public
cryo-ET particle picking by representation and metric learning
deep-learning metric-learning cryo-em
deep-learning metric-learning cryo-em cryo-et particle-picking
Python
•
Mozilla Public License 2.0
•10•44•10•1•Updated Nov 24, 2025Nov 24, 2025
ALSTracker
Public
Bayesian ALS Tracking and Phase Evaluation
bayesian-statistics healthcare-application amyotrophic-lateral-sclerosis
bayesian-statistics healthcare-application amyotrophic-lateral-sclerosis
HTML
•
Mozilla Public License 2.0
•0•0•0•0•Updated Mar 10, 2025Mar 10, 2025
transphire
Public
Transphire: Cryo-EM on the fly processing pipeline
cryo-em
cryo-em
Python
•
GNU General Public License v3.0
•2•8•0•0•Updated Jan 9, 2025Jan 9, 2025
tem-simulator-scripts
Public
Scripts to simulation of Tomograms with the TEM Simulator easy.
Python
•
Mozilla Public License 2.0
•2•11•4•1•Updated Dec 18, 2024Dec 18, 2024
sphire-janni
Public
Just another noise 2 noise implementation (JANNI) with Keras
deep-learning keras noise2noise
deep-learning keras noise2noise sphire
Jupyter Notebook
•
Other
•3•3•0•3•Updated Aug 2, 2024Aug 2, 2024
sphire_classes_autoselect
Public
Simple binary classification tool for cryo-EM and cryo-ET
Python
•
MIT License
•0•5•0•2•Updated Aug 2, 2024Aug 2, 2024
cryodrgn
Public
Neural networks for cryo-EM reconstruction
Python
•
GNU General Public License v3.0
•87•0•0•0•Updated May 7, 2024May 7, 2024
pyStarDB
Public
Star file python package
Python
•
MIT License
•0•0•1•0•Updated Apr 3, 2024Apr 3, 2024
facility-autobadge
Public
facility-autobadge creates a traffic light system for facility devices on your gitlab repo startpage. The traffic light system gets automatically updated based …
microscopy facility-management
microscopy facility-management
Python
•
Mozilla Public License 2.0
•0•0•0•0•Updated Feb 15, 2024Feb 15, 2024
pymissense
Public
PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
deep-learning structural-biology protein-structure
deep-learning structural-biology protein-structure protein-sequences uniprot protein-structure-prediction
Python
•
Mozilla Public License 2.0
•0•23•3•0•Updated Oct 13, 2023Oct 13, 2023
LineEnhancer
Public
Python
•
MIT License
•0•0•0•1•Updated Aug 21, 2023Aug 21, 2023
transphire_transform
Public
Utilites to change between SPHIRE, RELION and to modify the data
Python
•
MIT License
•0•3•0•5•Updated Dec 8, 2022Dec 8, 2022
pyem
Public
Python programs for electron microscopy
Python
•
GNU General Public License v3.0
•55•0•0•0•Updated Dec 5, 2022Dec 5, 2022
IsoNet
Public
Python
•
MIT License
•15•0•0•0•Updated Nov 7, 2022Nov 7, 2022
StarGUI
Public
Making star file manipulation easy with Pandas and a GUI
Python
•
GNU General Public License v3.0
•0•0•0•0•Updated Jul 6, 2022Jul 6, 2022
ij_striper
Public
Java
•0•0•0•2•Updated Apr 26, 2021Apr 26, 2021
sphire_tutorial
Public
Tutorial for the SPHIRE software suite
TeX
•0•0•0•0•Updated Sep 23, 2020Sep 23, 2020
striper
Public
Python
•0•0•0•0•Updated Feb 18, 2020Feb 18, 2020

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Max Planck Institute of Molecular Physiology

All

All

21 repositories

cryolo

napari-tomotwin

napari-boxmanager

tomotwin-cryoet

ALSTracker

transphire

tem-simulator-scripts

sphire-janni

sphire_classes_autoselect

cryodrgn

pyStarDB

facility-autobadge

pymissense

LineEnhancer

transphire_transform

pyem

IsoNet

StarGUI

ij_striper

sphire_tutorial

striper

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All

Repositories list

21 repositories