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    11 repositories

    • PartSegCore-compiled-backend

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•2•1•Updated Apr 21, 2026Apr 21, 2026

    • PartSeg

      Public
      Tool for segmentation in bioimaging
      bioimage-analysisnapari
      bioimage-analysisnapari
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •10•36•8•10•Updated Apr 21, 2026Apr 21, 2026

    • PartSeg-smfish

      Public
      PartSeg and napari plugin for smfish data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•1•0•Updated Jul 29, 2025Jul 29, 2025

    • smfish-PartSeg

      Public
      Python
      •0•0•0•0•Updated Oct 20, 2022Oct 20, 2022

    • PartSeg_cellpose

      Public
      Cellpose plugin for PartSeg
      Python
      •0•0•0•0•Updated Oct 4, 2021Oct 4, 2021

    • big-fish

      Public
      Toolbox for the analysis of smFISH images.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •24•0•0•0•Updated Sep 6, 2021Sep 6, 2021

    • tad_compare

      Public
      Compare different sets of TADs inferred from Hi-C data (or other 3C technique) using different methods.
      bioinformaticsgenomicshi-c
      bioinformaticsgenomicshi-ctadsccdchia-pet3dgenome
      Python
      •2•1•1•1•Updated Jun 6, 2021Jun 6, 2021

    • PartSegData

      Public
      Data for PartSeg
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 26, 2021Jan 26, 2021

    • md_soft

      Public
      Polymer modelling engine
      Python
      •0•0•0•0•Updated Nov 3, 2020Nov 3, 2020

    • PartSeg_stardist

      Public
      stardist plugin for partseg
      Python
      •0•0•0•0•Updated Jun 20, 2020Jun 20, 2020

    • 3DEpiLoop

      Public
      Three-dimensional Epigenome Statistical Model: Genome-wide Chromatin Looping Prediction
      0•0•0•0•Updated Feb 15, 2018Feb 15, 2018
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