Update README and docs.

PiperOrigin-RevId: 513337081

Author: anastasiyabl

README.md

@@ -39,10 +39,10 @@ CCS/HiFi reads for downstream analyses.
 
 For context, we are the team that created and maintains both DeepConsensus and
 DeepVariant. For variant calling with DeepVariant, we tested different models
-and found that the best performance is with DeepVariant v1.4 using the normal
+and found that the best performance is with DeepVariant v1.5 using the normal
 pacbio model rather than the model trained on DeepConsensus v0.1 output. We plan
 to include DeepConsensus v1.2 outputs when training the next DeepVariant model,
-so if there is a DeepVariant version later than v1.4 when you read this, we
+so if there is a DeepVariant version later than v1.5 when you read this, we
 recommend using that latest version.
 
 ### For assembly downstream

docs/generate_examples.md

@@ -61,11 +61,11 @@ mkdir "${TF_EXAMPLES_DIR}/test"
 gsutil cp gs://brain-genomics-public/research/deepconsensus/quickstart/v1.2/n1000.subreads.bam "${BASE_DIR}"/
 
 # Truth Reference
-gsutil cp gs://deepconsensus/pacbio/datasets/chm13/chm13v2.0_noY.fa "${BASE_DIR}"/
+gsutil cp gs://brain-genomics-public/research/deepconsensus/training-tutorial/v1.2/chm13v2.0_noY.fa "${BASE_DIR}"/
 # Truth exclude BED
-gsutil cp gs://deepconsensus/pacbio/datasets/chm13/chm13v2.0_noY_hifi.issues.bed "${BASE_DIR}"/
+gsutil cp gs://brain-genomics-public/research/deepconsensus/training-tutorial/v1.2/chm13v2.0_noY_hifi.issues.bed "${BASE_DIR}"/
 # Truth split
-gsutil cp gs://deepconsensus/pacbio/datasets/chm13/chm13v2.0_noY.chrom_mapping.txt "${BASE_DIR}"/
+gsutil cp gs://brain-genomics-public/research/deepconsensus/training-tutorial/v1.2/chm13v2.0_noY.chrom_mapping.txt "${BASE_DIR}"/
 
 cd "${BASE_DIR}"
 ```