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Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -44,21 +44,21 @@ m64014_200920_132517 | HG002 | 2.2 | 24 kb
4444 <td>121.78%</td>
4545 <td>4.06 Gb</td>
4646 <td>167.33%</td>
47- <td>301.46 </td>
47+ <td>277.68 </td>
4848 </tr>
4949 <tr>
5050 <td>v0.3</td>
5151 <td>m64008_201124_002822</td>
5252 <td>chem2.2_15kb</td>
5353 <td>2,689,147</td>
54- <td>2,864,910 </td>
54+ <td>2,864,908 </td>
5555 <td>42.41 Gb</td>
5656 <td>106.09%</td>
5757 <td>30.41 Gb</td>
5858 <td>115.70%</td>
5959 <td>7.54 Gb</td>
6060 <td>191.51%</td>
61- <td>739.09 </td>
61+ <td>683.97 </td>
6262 </tr>
6363 <tr>
6464 <td>v0.3</td>
@@ -72,7 +72,7 @@ m64014_200920_132517 | HG002 | 2.2 | 24 kb
7272 <td>149.24%</td>
7373 <td>1.60 Gb</td>
7474 <td>462.97%</td>
75- <td>1,003.86 </td>
75+ <td>925.01 </td>
7676 </tr>
7777 </tbody >
7878</table >
@@ -92,11 +92,9 @@ follows:
9292 e.g. 40% percent means that DeepConsensus increased yield of high quality
9393 reads in bases by 40% over CCS.
9494
95- These were run on GCP ` n1-standard-32 ` machines with no GPU (in 500 shards,
96- combined above), with ` --batch_zmws=500 --batch_size=1024 ` . However, in our
97- runtime tests we find that using ` n1-standard-16 ` VMs with `--batch_zmws=100
98- --batch_size=1024` has similar runtime with fewer CPUs and memory needed. For
99- more information on compute setups, see the
95+ These were run on GCP ` n1-standard-16 ` machines with no GPU (in 500 shards,
96+ combined above), with ` --batch_zmws=100 --batch_size=1024 ` , which is generally
97+ what we recommend. For more information on compute setups, see the
10098[ runtime metrics page] ( runtime_metrics.md ) .
10199
102100## Runtime-yield tradeoffs with ` --skip_windows_above `
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