Setup GitHub actions for automated testing on example data and linting https://snakemake.readthedocs.io/en/stable/snakefiles/best_practices.html#test-your-workflow-continuously Use: https://github.com/snakemake/snakemake-github-action See wiki for instructions - [ ] https://github.com/epigen/unsupervised_analysis - [ ] https://github.com/epigen/atacseq_pipeline - [ ] https://github.com/epigen/rnaseq_pipeline - [ ] https://github.com/epigen/fetch_ngs - [ ] https://github.com/epigen/spilterlize_integrate - [ ] https://github.com/epigen/dea_limma - [ ] https://github.com/epigen/genome_tracks - [ ] https://github.com/epigen/enrichment_analysis - [ ] https://github.com/epigen/scrnaseq_processing_seurat - [ ] https://github.com/epigen/dea_seurat - [ ] https://github.com/epigen/mixscape_seurat
Setup GitHub actions for automated testing on example data and linting
https://snakemake.readthedocs.io/en/stable/snakefiles/best_practices.html#test-your-workflow-continuously
Use: https://github.com/snakemake/snakemake-github-action
See wiki for instructions