Scripts to reproduce the results of Buchfink et al., "Sensitive clustering of protein sequences at tree-of-life scale using DIAMOND DeepClust".
Data files that are required (see Data availability):
arch80_all.tsv: File mapping NCBI accessions to Pfam domain architectures.nr_accessions.tsv.zst: List of all accessions in NR database that was used for the main benchmark.clan2acc.tsv: File mapping Pfam accessions to clans.clust.dedup2.tsv.zst: TSV file mapping cluster member sequences to representatives for the big ~19bn clustering run.centroids.dedup.faa: FASTA file of representatives for the big ~19bn clustering run.