fixes (?) for ".. doctests..::"

Author: ashleythomasbarnes

docs/eso/eso.rst

@@ -27,15 +27,17 @@ and show how to download the corresponding data products.
     >>> from astroquery.eso import Eso
     >>> eso = Eso()
 
-    >>> from astropy.coordinates import SkyCoord 
-    >>> import astropy.units as u 
-    >>> coords = SkyCoord.from_name("HD 37903") 
-    >>> ra = coords.ra.value
-    >>> dec = coords.dec.value
-    >>> r = (1*u.arcsec).to(u.deg).value
-
-    >>> table_raw = eso.query_main("ESPRESSO", cone_ra=ra, cone_dec=dec, cone_radius=r)
-    >>> table_reduced = eso.query_surveys("ESPRESSO", cone_ra=ra, cone_dec=dec, cone_radius=r)
+.. doctest-remote-data::
+
+    >>> from astropy.coordinates import SkyCoord   # doctest: +SKIP
+    >>> import astropy.units as u  
+    >>> coords = SkyCoord.from_name("HD 37903")  # doctest: +SKIP
+    >>> ra = coords.ra.value  # doctest: +SKIP
+    >>> dec = coords.dec.value  # doctest: +SKIP
+    >>> r = (1*u.arcsec).to(u.deg).value  # doctest: +SKIP
+
+    >>> table_raw = eso.query_main("ESPRESSO", cone_ra=ra, cone_dec=dec, cone_radius=r)  # doctest: +SKIP
+    >>> table_reduced = eso.query_surveys("ESPRESSO", cone_ra=ra, cone_dec=dec, cone_radius=r)  # doctest: +SKIP
 
     >>> eso.retrieve_data(table_raw["dp_id"])  # doctest: +SKIP
     >>> eso.retrieve_data(table_reduced["dp_id"])  # doctest: +SKIP
@@ -56,7 +58,7 @@ By default, queries are limited to returning a maximum of 1000 rows. This limit
 can be modified by setting the ``ROW_LIMIT`` attribute. To disable truncation
 and return all matching results (up to TAP limit of 15,000,000), set:
 
-.. doctest:: 
+.. doctest-remote-data::
 
     >>> eso.ROW_LIMIT = -1 # 0 or None to return all results without truncation 
 

docs/eso/eso_cat_cone_search.rst

@@ -30,7 +30,9 @@ For example:
 
     >>> from astroquery.eso import Eso
     >>> eso = Eso()
-    
+
+.. doctest-remote-data::
+
     >>> eso.query_catalogue(catalogue='KiDS_DR4_1_ugriZYJHKs_cat_fits', help=True) # doctest: +IGNORE_OUTPUT
     ...
                 RAJ2000   DOUBLE              deg                   pos.eq.ra;meta.main
@@ -87,8 +89,10 @@ Define target of interest and search radius:
     >>> from astropy.coordinates import SkyCoord
     >>> import astropy.units as u
 
+.. doctest-remote-data::
+
     >>> table_name = "KiDS_DR4_1_ugriZYJHKs_cat_fits"
-    >>> coords = SkyCoord.from_name("NGC1097")
+    >>> coords = SkyCoord.from_name("NGC1097")  # doctest: +SKIP
     >>> radius = 3 * u.arcmin
 
 Helper functions to identify the main ``id``, ``ra``, and ``dec`` columns
@@ -194,13 +198,15 @@ Run search with cone filter:
     ...     dec=coords.dec,
     ...     radius=radius,
     ...     table_name=table_name,
-    ... )
+    ... )  # doctest: +SKIP
+
+.. doctest-remote-data::
 
     >>> table = eso.query_catalogue(
     ...     catalogue=table_name,
     ...     column_filters=column_filters,
-    ... )
-    >>> table # doctest: +IGNORE_OUTPUT
+    ... )  # doctest: +SKIP
+    >>> table # doctest: +SKIP
     <Table length=55>
     Level    ALPHA_J2000      A_IMAGE         A_WORLD    ...      Z_B_MAX             Z_B_MIN               Z_ML       
     count        deg           pixel            deg      ...                                                           
@@ -231,7 +237,7 @@ normal dictionary updates.
     >>> table = eso.query_catalogue(
     ...     catalogue="KiDS_DR4_1_ugriZYJHKs_cat_fits",
     ...     column_filters=column_filters,
-    ... ) # doctest: +IGNORE_OUTPUT
+    ... )  # doctest: +SKIP
     <Table length=6>
     Level    ALPHA_J2000      A_IMAGE         A_WORLD     Agaper ...   Ypos     Z_B   Z_B_MAX       Z_B_MIN              Z_ML       
     count        deg           pixel            deg       arcsec ...  pixel                                                         

docs/eso/eso_cat_query.rst

@@ -18,6 +18,8 @@ catalogue.
     >>> from astroquery.eso import Eso
     >>> eso = Eso()
 
+.. doctest-remote-data::
+
     >>> eso.list_catalogues(all_versions=False) # doctest: +IGNORE_OUTPUT
     ['AMBRE_V1',
      'ATLASGAL_V1',
@@ -31,7 +33,6 @@ catalogue.
      ...
      'vmc_dr7_yjks_back_V1',
      'vmc_dr7_yjks_varCat_V3']
-
     >>> print(len(eso.list_catalogues(all_versions=False))) # doctest: +IGNORE_OUTPUT
     86
 
@@ -54,7 +55,6 @@ To include every available version of every catalogue, set
      ...
      'vmc_dr7_yjks_back_V1',
      'vmc_dr7_yjks_varCat_V3']
-
     >>> print(len(eso.list_catalogues(all_versions=True))) # doctest: +IGNORE_OUTPUT
     129
 
@@ -110,8 +110,8 @@ table. To see more infomation on this specific version of the Kilo-Degree Survey
         ... WHERE schema_name = 'safcat' AND cat_id IS NOT NULL
         ... ORDER BY cat_id
         ... """
-        >>> tbl = eso.query_tap(query, which_tap="tap_cat")
-        >>> print(tbl[:5]) # doctest: +IGNORE_OUTPUT
+        >>> tbl = eso.query_tap(query, which_tap="tap_cat") # doctest: +SKIP
+        >>> print(tbl[:5]) # doctest: +SKIP
         table_name       cat_id                  release_documentation_url                 
         ---------------- ------ -----------------------------------------------------------
         AMBRE_V1             13 https://www.eso.org/rm/api/v1/public/releaseDescriptions/7

docs/eso/eso_cat_tap.rst

@@ -11,11 +11,13 @@ free ADQL, using :meth:`~astroquery.eso.EsoClass.query_tap`. By default,
 Basic Usage
 ===========
 
-.. doctest-skip::
+.. doctest-remote-data::
 
     >>> from astroquery.eso import Eso
     >>> eso = Eso()
-    
+
+.. doctest-remote-data::
+
     >>> query = "SELECT table_name FROM TAP_SCHEMA.tables"
     >>> table = eso.query_tap(query, which_tap="tap_cat")
 
@@ -35,9 +37,6 @@ https://www.eso.org/rm/api/v1/public/releaseDescriptions/7
 
 .. doctest-remote-data::
 
-    >>> from astroquery.eso import Eso
-    >>> eso = Eso()
-
     >>> query = """
     ... SELECT table_name, cat_id, rel_descr_url
     ... FROM TAP_SCHEMA.tables
@@ -161,12 +160,13 @@ the query, as e.g.:
 
     >>> import astropy.units as u
     >>> from astropy.coordinates import SkyCoord
-
     >>> target = SkyCoord.from_name("ESO 154-10")  
     >>> ra_deg = target.icrs.ra.to_value(u.deg)
     >>> dec_deg = target.icrs.dec.to_value(u.deg)
     >>> radius_deg = (2.4 * u.arcmin).to_value(u.deg)  
 
+.. doctest-remote-data::
+
     >>> query = f"""
     ... SELECT host_id, transient_id, transient_classification,
     ...        transient_raj2000, transient_decj2000
@@ -285,10 +285,12 @@ This can also be done using a name resolver for the target coordinates, as previ
     >>> import astropy.units as u
     >>> from astropy.coordinates import SkyCoord
 
-    >>> target = SkyCoord.from_name("ESO 154-10") 
-    >>> ra_deg = target.icrs.ra.to_value(u.deg)
-    >>> dec_deg = target.icrs.dec.to_value(u.deg)
-    >>> radius_deg = (3 * u.arcmin).to_value(u.deg)  
+    >>> target = SkyCoord.from_name("ESO 154-10") # doctest: +SKIP
+    >>> ra_deg = target.icrs.ra.to_value(u.deg) # doctest: +SKIP
+    >>> dec_deg = target.icrs.dec.to_value(u.deg) # doctest: +SKIP
+    >>> radius_deg = (3 * u.arcmin).to_value(u.deg)  # doctest: +SKIP
+
+.. doctest-remote-data::
 
     >>> query = f"""
     ... SELECT host_id, transient_id, transient_classification,
@@ -303,4 +305,4 @@ This can also be done using a name resolver for the target coordinates, as previ
     ... ) = 1
     ... ORDER BY transient_id
     ... """
-    >>> table = eso.query_tap(query, which_tap="tap_cat")
+    >>> table = eso.query_tap(query, which_tap="tap_cat") # doctest: +SKIP

docs/eso/eso_login.rst

@@ -24,6 +24,8 @@ The following examples show typical login and data retrieval workflows:
     >>> from astroquery.eso import Eso
     >>> eso = Eso()
 
+.. doctest-remote-data::
+
     >>> eso.login(username="TEST") # doctest: +SKIP
     WARNING: No password was found in the keychain for the provided username. [astroquery.query]
     TEST, enter your password:

docs/eso/eso_obs_apex.rst

@@ -40,26 +40,36 @@ the ESO proposal ID.
     >>> from astroquery.eso import Eso
     >>> eso = Eso()
 
+.. doctest-remote-data::
+
     >>> # query the ESO archive for the ALCOHOLS survey
     >>> table_reduced = eso.query_surveys("ALCOHOLS") 
 
+.. doctest-remote-data::
+
     >>> # extract unique ESO run IDs from the query result
     >>> # (the survey table actually contains ESO run IDs)
     >>> run_ids = list(set(table_reduced["proposal_id"]))
-    
+
+.. doctest-remote-data::
+
     >>> # check if we have a single run ID or multiple
     >>> if len(run_ids) == 1:
     ...     run_id = run_ids[0]
     ... else:
     ...     print("Warning: Multiple proposal IDs found...")
     ...     run_id = run_ids[0]
-    
+ 
+.. doctest-remote-data::
+   
     >>> # Extract the proposal (aka programme) ID from the run ID
     >>> def proposal_remove_run(run_id):
     ...     proposal_id = ".".join(run_id.split(".", 2)[:2])
     ...     proposal_id = ".".join(proposal_id.split("(")[:1])
     ...     return proposal_id
 
+.. doctest-remote-data::
+
     >>> proposal_id = proposal_remove_run(run_id)
     >>> print(f"Proposal ID: {proposal_id}")
     Proposal ID: 094.C-0935
@@ -110,9 +120,13 @@ retrieved from the previous query.
     >>> # query the APEX instrument for data related to the ESO proposal ID
     >>> table_raw = eso.query_instrument("APEX", column_filters={"prog_id": f"like '{proposal_id}%'"})  
 
+.. doctest-remote-data::
+
     >>> # extract unique APEX project IDs from the raw data query
     >>> project_id = list(set(table_raw["project_id"])) 
 
+.. doctest-remote-data::
+
     >>> # assuming we only have one project ID 
     >>> project_id = project_id[0] 
     >>> print(f"Project ID: {project_id}")

docs/eso/eso_obs_cone_search.rst

@@ -20,7 +20,6 @@ This example demonstrates how to perform a basic cone search for publicly availa
 .. doctest-remote-data::
 
     >>> import astropy.units as u 
-
     >>> ra = 266.41683 *u.deg # degrees
     >>> dec = -29.00781 *u.deg # degrees
     >>> radius = 0.05 *u.deg # degrees
@@ -30,7 +29,6 @@ If coordinates are not known, you can use the :class:`~astropy.coordinates.SkyCo
 .. doctest-remote-data::
 
     >>> from astropy.coordinates import SkyCoord  
-
     >>> coords = SkyCoord.from_name("Sgr A*") 
     >>> ra = coords.ra
     >>> dec = coords.dec
@@ -43,6 +41,8 @@ With the defined coordinates and radius, we can now perform the cone search usin
     >>> from astroquery.eso import Eso
     >>> eso = Eso()
 
+.. doctest-remote-data::
+
     >>> table = eso.query_surveys(
     ...             cone_ra=ra.value,
     ...             cone_dec=dec.value,

docs/eso/eso_obs_download.rst

@@ -10,6 +10,8 @@ Assuming you have already performed a query (e.g., using :meth:`~astroquery.eso.
     >>> from astroquery.eso import Eso
     >>> eso = Eso()
 
+.. doctest-remote-data::
+
     >>> data_files = eso.retrieve_data(table['dp_id'][:2]) # doctest: +SKIP
     INFO: Downloading datasets ... [astroquery.eso.core]
     INFO: Downloading 2 files ... [astroquery.eso.core]

docs/eso/eso_obs_header_info.rst

@@ -12,6 +12,8 @@ There is, however, a way to get the full primary header of the FITS data product
     >>> from astroquery.eso import Eso
     >>> eso = Eso()
 
+.. doctest-remote-data::
+
     >>> table = eso.query_instrument("midi",
     ...                     column_filters={
     ...                         "date_obs": "between '2008-01-01' and '2008-01-02'"

docs/eso/eso_obs_raw_general.rst

@@ -34,6 +34,8 @@ interpretation reflected in the ``xtype`` field.
     >>> from astroquery.eso import Eso
     >>> eso = Eso()
 
+.. doctest-remote-data::
+
     >>> eso.query_main(help=True) # doctest: +IGNORE_OUTPUT
     INFO: 
     Columns present in the table dbo.raw:
@@ -64,11 +66,15 @@ time constraint specified down to the second.
     >>> from astropy.coordinates import SkyCoord
     >>> import astropy.units as u
 
-    >>> coords = SkyCoord.from_name("SN2013am")  # The Prawn Nebula
+.. doctest-remote-data::
+
+    >>> coords = SkyCoord.from_name("SN2013am")  # doctest: +SKIP
     >>> ra = coords.ra.value
     >>> dec = coords.dec.value
     >>> r = (30 * u.arcsec).to(u.deg).value
 
+.. doctest-remote-data::
+
     >>> table = eso.query_main(
     ...              cone_ra=ra,
     ...              cone_dec=dec,
@@ -77,8 +83,8 @@ time constraint specified down to the second.
     ...                  "exp_start": "between '2013-04-12' and '2013-04-12T04:52:06'"
     ...              },
     ...              columns=["object", "ra", "dec", "date_obs", "instrument", "prog_id"],
-    ...              )
-    >>> table # doctest: +IGNORE_OUTPUT
+    ...              )  # doctest: +SKIP
+    >>> table # doctest: +SKIP
     <Table length=13>
     object      ra      dec            date_obs            prog_id    instrument
                 deg      deg                                                     
@@ -177,22 +183,24 @@ from the interferometric instruments ``MIDI``, ``GRAVITY``, and ``PIONIER`` with
 
 .. doctest-remote-data::
 
-    >>> coords = SkyCoord.from_name("ETA CAR")  # Eta Carinae
+    >>> coords = SkyCoord.from_name("ETA CAR")  # doctest: +SKIP
     >>> ra = coords.ra.value
     >>> dec = coords.dec.value
     >>> r = (10 * u.arcsec).to(u.deg).value 
 
+.. doctest-remote-data::
+
     >>> table = eso.query_main(
     ...              cone_ra=ra,
     ...              cone_dec=dec,
     ...              cone_radius=r,
     ...              instruments=["midi", "gravity", "pionier"],
     ...              column_filters={
     ...              columns=["instrument", "object", "ra", "dec", "date_obs", "prog_id"]
-    ...              )
-    >>> print(len(table)) # doctest: +IGNORE_OUTPUT
+    ...              )  # doctest: +SKIP
+    >>> print(len(table)) # doctest: +SKIP
     622
-    >>> table[["object", "ra", "dec", "date_obs", "prog_id"]] # doctest: +IGNORE_OUTPUT
+    >>> table[["object", "ra", "dec", "date_obs", "prog_id"]] # doctest: +SKIP
     <Table length=622>
     object         ra         dec            date_obs            prog_id    instrument
                     deg         deg                                                     
@@ -224,9 +232,8 @@ from the interferometric instruments ``MIDI``, ``GRAVITY``, and ``PIONIER`` with
         ...     "ins_opt1_name": "HIGH_SENS",  # High sensitivity mode
         ...     "night_flag": "night",         # Nighttime observations only
         ...     "moon_illu": "< 0",            # No moon (below horizon)
-        ...     "lst": "between 0 and 6"       # Local sidereal time early in the night
-        ... }
-        >>> table = eso.query_instrument("midi", column_filters=column_filters)
+        ...     "lst": "between 0 and 6"}      # Local sidereal time early in the night
+        >>> table = eso.query_instrument("midi", column_filters=column_filters) # doctest: +SKIP
 
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