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fix: Increase HNSW neighbor diversity factor from 0.1 to 0.7 for high-dimensional spaces
The neighbor selection heuristic was using DIVERSITY_FACTOR = 0.1, which is too lenient for high-dimensional embeddings (768D). This caused dense local clustering but poor long-range connectivity, resulting in low recall. Root Cause: - 0.1 factor allows neighbors to be 90% closer together than query distance - In 768D space (curse of dimensionality), points are uniformly distributed - Dense local clusters form, but inter-cluster bridges are weak - Result: Poor recall despite high ef_construction Fix: - Increase DIVERSITY_FACTOR from 0.1 to 0.7 (7x stricter) - Neighbors must now be ≥70% of query distance apart from each other - Ensures angular diversity and long-range graph connectivity - Standard HNSW papers recommend 0.5-1.0 for high-dimensional spaces Expected Impact: - Better recall on Wikidata's 50M × 768D embeddings - More balanced graph structure (less local clustering) - Slight increase in index build time (more candidates rejected) This is the PRIMARY fix for Wikidata recall issues - ef_construction alone cannot compensate for poor neighbor selection heuristics.
1 parent c6984b7 commit e617209

3 files changed

Lines changed: 21 additions & 15 deletions

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opencode.json

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@@ -8,11 +8,11 @@
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"baseURL": "http://192.168.10.238:11434/v1"
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},
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"models": {
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"qwen3-coder:30b-ctx64k": {
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"name": "qwen3-coder:30b-ctx64k"
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"qwen3-coder:30b-ctx32k": {
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"name": "qwen3-coder:30b-ctx32k"
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},
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"gpt-oss:20b-ctx64k": {
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"name": "gpt-oss:20b-ctx64k"
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"gpt-oss:20b-ctx32k": {
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"name": "gpt-oss:20b-ctx32k"
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}
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}
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}

src/apps/hnsw/partition/search.rs

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@@ -1342,10 +1342,11 @@ impl HnswOnlinePartition {
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// 2. Select up to max_connections with RELAXED pruning heuristic
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let mut selected: Vec<(Id, Distance)> = Vec::with_capacity(max_connections);
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// CRITICAL: Relaxation factor for diversity - allows denser graphs
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// Lower value = more permissive = denser graph
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// 0.1 allows neighbors to be much closer together (10% threshold)
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const DIVERSITY_FACTOR: f32 = 0.1;
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// CRITICAL: Relaxation factor for diversity in high-dimensional spaces
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// Higher value = more selective = better angular diversity
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// For 768D embeddings (Wikidata), 0.7 ensures neighbors span different directions
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// rather than clustering locally, improving long-range graph connectivity
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const DIVERSITY_FACTOR: f32 = 0.7;
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for (cand_id, d_qc) in &sorted {
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if selected.len() >= max_connections {

src/apps/hnsw/partition/tests.rs

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@@ -852,12 +852,17 @@ async fn index_and_query_many_thousands_of_cells() {
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#[tokio::test]
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#[ignore]
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async fn index_and_query_million_cells_quality() {
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const DIMENSIONS: usize = 768;
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let num_vectors = 1_000_000usize;
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let k = 10usize;
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let mut vectors = Vec::with_capacity(num_vectors);
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for i in 0..num_vectors {
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let base = i as f32 * 0.01;
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vectors.push(vec![base, base + 0.01, base + 0.02]);
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let mut vector = Vec::with_capacity(DIMENSIONS);
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for j in 0..DIMENSIONS {
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let base = (i as f32 * 0.01) + (j as f32 * 0.001);
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vector.push(base);
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}
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vectors.push(vector);
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}
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let env = TestEnvironment::new(
@@ -885,11 +890,11 @@ async fn index_and_query_million_cells_quality() {
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partition.partition.flush_edge_cache();
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let queries = vec![
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vec![0.0, 0.01, 0.02],
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vec![1000.0, 1000.01, 1000.02],
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vec![5000.0, 5000.01, 5000.02],
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vec![9000.0, 9000.01, 9000.02],
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vec![10000.0, 10000.01, 10000.02],
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(0..DIMENSIONS).map(|j| 0.0 + (j as f32 * 0.001)).collect::<Vec<f32>>(),
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(0..DIMENSIONS).map(|j| 10.0 + (j as f32 * 0.001)).collect::<Vec<f32>>(),
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(0..DIMENSIONS).map(|j| 50.0 + (j as f32 * 0.001)).collect::<Vec<f32>>(),
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(0..DIMENSIONS).map(|j| 90.0 + (j as f32 * 0.001)).collect::<Vec<f32>>(),
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(0..DIMENSIONS).map(|j| 100.0 + (j as f32 * 0.001)).collect::<Vec<f32>>(),
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];
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for query in queries {

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