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Fix unused footnote and add warnonly for :footnote in makedocs
Fix the unused [^2] footnote in EGFR_Benchmark.md that was breaking the Documenter build. Also add warnonly=[:footnote] to makedocs so that future footnote issues in auto-generated benchmark markdown don't break the entire documentation build. Co-Authored-By: Chris Rackauckas <accounts@chrisrackauckas.com> Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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docs/make.jl

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@@ -11,7 +11,7 @@ makedocs(
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sitename="The SciML Benchmarks",
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authors="Chris Rackauckas",
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modules=[SciMLBenchmarksOutput],
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clean=true, doctest=false,
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clean=true, doctest=false, warnonly=[:footnote],
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format=Documenter.HTML(#analytics = "UA-90474609-3",
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assets=["assets/favicon.ico"],
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canonical="https://benchmarks.sciml.ai/stable/"),

markdown/Jumps/EGFR_Benchmark.md

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We will benchmark the aggregators of JumpProcesses on a epidermal growth factor receptor signaling network (356 species, 3749 reactions).[^1]
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We will benchmark the aggregators of JumpProcesses on a epidermal growth factor receptor signaling network (356 species, 3749 reactions)[^1], modeled using Catalyst.jl[^2].
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Let's first look at how the model equilibriates to make sure we get consistent results for all the methods. Let's plot the dimer concentration as a function of time using each of the different stochastic simulation algorithms.
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