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Commit ed7d863

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author
RJain12
committed
HFC update & Fixes
1 parent 783c768 commit ed7d863

45 files changed

Lines changed: 1434 additions & 191 deletions

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‎benchmark_results/HFC_benchmarks.csv‎

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‎benchmark_sequences/HFC/BIRC5_dna.fasta‎

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>NM_001012271.2 Homo sapiens baculoviral IAP repeat containing 5 (BIRC5), transcript variant 3, mRNA
2+
ATGGGCGCGCCGACCCTGCCGCCGGCGTGGCAGCCGTTTCTGAAAGATCATCGTATTAGC
3+
ACCTTTAAAAACTGGCCGTTTCTGGAAGGCTGCGCGTGCACCCCGGAACGTATGGCGGAA
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GCGGGCTTTATTCATTGCCCGACCGAAAACGAACCGGATCTGGCGCAGTGCTTTTTTTGC
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TTTAAAGAACTGGAAGGCTGGGAACCGGATGATGATCCGATTGGCCCGGGCACCGTGGCG
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TATGCGTGCAACACCAGCACCCTGGGCGGCCGTGGCGGCCGTATTACCCGTGAAGAACAT
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AAAAAACATAGCAGCGGCTGCGCGTTTCTGAGCGTGAAAAAACAGTTTGAAGAACTGACC
8+
CTGGGCGAATTTCTGAAACTGGATCGTGAACGTGCGAAAAACAAAATTGCGAAAGAAACC
9+
AACAACAAAAAAAAAGAATTTGAAGAAACCGCGGAAAAAGTGCGTCGTGCGATTGAACAG
10+
CTGGCGGCGATGGATTAA

‎benchmark_sequences/HFC/BRAF1_dna.fasta‎

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>NM_004333.6 Homo sapiens B-Raf proto-oncogene, serine/threonine kinase (BRAF), transcript variant 1, mRNA
2+
ATGGCGGCGCTGAGCGGCGGCGGCGGCGGCGGCGCGGAACCGGGCCAGGCGCTGTTTAAC
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GGCGATATGGAACCGGAAGCGGGCGCGGGCGCGGGCGCGGCGGCGAGCAGCGCGGCGGAT
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CCGGCGATTCCGGAAGAAGTGTGGAACATTAAACAGATGATTAAACTGACCCAGGAACAT
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ATTGAAGCGCTGCTGGATAAATTTGGCGGCGAACATAACCCGCCGAGCATTTATCTGGAA
6+
GCGTATGAAGAATATACCAGCAAACTGGATGCGCTGCAGCAGCGTGAACAGCAGCTGCTG
7+
GAAAGCCTGGGCAACGGCACCGATTTTAGCGTGAGCAGCAGCGCGAGCATGGATACCGTG
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ACCAGCAGCAGCAGCAGCAGCCTGAGCGTGCTGCCGAGCAGCCTGAGCGTGTTTCAGAAC
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CCGACCGATGTGGCGCGTAGCAACCCGAAAAGCCCGCAGAAACCGATTGTGCGTGTGTTT
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CTGCCGAACAAACAGCGTACCGTGGTGCCGGCGCGTTGCGGCGTGACCGTGCGTGATAGC
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CTGAAAAAAGCGCTGATGATGCGTGGCCTGATTCCGGAATGCTGCGCGGTGTATCGTATT
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CAGGATGGCGAAAAAAAACCGATTGGCTGGGATACCGATATTAGCTGGCTGACCGGCGAA
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GAACTGCATGTGGAAGTGCTGGAAAACGTGCCGCTGACCACCCATAACTTTGTGCGTAAA
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ACCTTTTTTACCCTGGCGTTTTGCGATTTTTGCCGTAAACTGCTGTTTCAGGGCTTTCGT
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TGCCAGACCTGCGGCTATAAATTTCATCAGCGTTGCAGCACCGAAGTGCCGCTGATGTGC
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GTGAACTATGATCAGCTGGATCTGCTGTTTGTGAGCAAATTTTTTGAACATCATCCGATT
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CCGCAGGAAGAAGCGAGCCTGGCGGAAACCGCGCTGACCAGCGGCAGCAGCCCGAGCGCG
18+
CCGGCGAGCGATAGCATTGGCCCGCAGATTCTGACCAGCCCGAGCCCGAGCAAAAGCATT
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CCGATTCCGCAGCCGTTTCGTCCGGCGGATGAAGATCATCGTAACCAGTTTGGCCAGCGT
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GATCGTAGCAGCAGCGCGCCGAACGTGCATATTAACACCATTGAACCGGTGAACATTGAT
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GATCTGATTCGTGATCAGGGCTTTCGTGGCGATGGCGGCAGCACCACCGGCCTGAGCGCG
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ACCCCGCCGGCGAGCCTGCCGGGCAGCCTGACCAACGTGAAAGCGCTGCAGAAAAGCCCG
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GGCCCGCAGCGTGAACGTAAAAGCAGCAGCAGCAGCGAAGATCGTAACCGTATGAAAACC
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CTGGGCCGTCGTGATAGCAGCGATGATTGGGAAATTCCGGATGGCCAGATTACCGTGGGC
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CAGCGTATTGGCAGCGGCAGCTTTGGCACCGTGTATAAAGGCAAATGGCATGGCGATGTG
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GCGGTGAAAATGCTGAACGTGACCGCGCCGACCCCGCAGCAGCTGCAGGCGTTTAAAAAC
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GAAGTGGGCGTGCTGCGTAAAACCCGTCATGTGAACATTCTGCTGTTTATGGGCTATAGC
28+
ACCAAACCGCAGCTGGCGATTGTGACCCAGTGGTGCGAAGGCAGCAGCCTGTATCATCAT
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CTGCATATTATTGAAACCAAATTTGAAATGATTAAACTGATTGATATTGCGCGTCAGACC
30+
GCGCAGGGCATGGATTATCTGCATGCGAAAAGCATTATTCATCGTGATCTGAAAAGCAAC
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AACATTTTTCTGCATGAAGATCTGACCGTGAAAATTGGCGATTTTGGCCTGGCGACCGTG
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AAAAGCCGTTGGAGCGGCAGCCATCAGTTTGAACAGCTGAGCGGCAGCATTCTGTGGATG
33+
GCGCCGGAAGTGATTCGTATGCAGGATAAAAACCCGTATAGCTTTCAGAGCGATGTGTAT
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GCGTTTGGCATTGTGCTGTATGAACTGATGACCGGCCAGCTGCCGTATAGCAACATTAAC
35+
AACCGTGATCAGATTATTTTTATGGTGGGCCGTGGCTATCTGAGCCCGGATCTGAGCAAA
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GTGCGTAGCAACTGCCCGAAAGCGATGAAACGTCTGATGGCGGAATGCCTGAAAAAAAAA
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CGTGATGAACGTCCGCTGTTTCCGCAGATTCTGGCGAGCATTGAACTGCTGGCGCGTAGC
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CTGCCGAAAATTCATCGTAGCGCGAGCGAACCGAGCCTGAACCGTGCGGGCTTTCAGACC
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GAAGATTTTAGCCTGTATGCGTGCGCGAGCCCGAAAACCCCGATTCAGGCGGGCGGCTAT
40+
GGCGCGTTTCCGGTGCATTAA

‎benchmark_sequences/HFC/CAV1_dna.fasta‎

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>NM_001753.5 Homo sapiens caveolin 1 (CAV1), transcript variant 1, mRNA
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ATGAGCGGCGGCAAATATGTGGATAGCGAAGGCCATCTGTATACCGTGCCGATTCGTGAA
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CAGGGCAACATTTATAAACCGAACAACAAAGCGATGGCGGATGAACTGAGCGAAAAACAG
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GTGTATGATGCGCATACCAAAGAAATTGATCTGGTGAACCGTGATCCGAAACATCTGAAC
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GATGATGTGGTGAAAATTGATTTTGAAGATGTGATTGCGGAACCGGAAGGCACCCATAGC
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TTTGATGGCATTTGGAAAGCGAGCTTTACCACCTTTACCGTGACCAAATATTGGTTTTAT
7+
CGTCTGCTGAGCGCGCTGTTTGGCATTCCGATGGCGCTGATTTGGGGCATTTATTTTGCG
8+
ATTCTGAGCTTTCTGCATATTTGGGCGGTGGTGCCGTGCATTAAAAGCTTTCTGATTGAA
9+
ATTCAGTGCATTAGCCGTGTGTATAGCATTTATGTGCATACCGTGTGCGATCCGCTGTTT
10+
GAAGCGGTGGGCAAAATTTTTAGCAACGTGCGTATTAACCTGCAGAAAGAAATTTAA

‎benchmark_sequences/HFC/CD80_dna.fasta‎

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>NM_009855.2 Mus musculus CD80 antigen (Cd80), transcript variant 2, mRNA
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ATGGCGTGCAACTGCCAGCTGATGCAGGATACCCCGCTGCTGAAATTTCCGTGCCCGCGT
3+
CTGATTCTGCTGTTTGTGCTGCTGATTCGTCTGAGCCAGGTGAGCAGCGATGTGGATGAA
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CAGCTGAGCAAAAGCGTGAAAGATAAAGTGCTGCTGCCGTGCCGTTATAACAGCCCGCAT
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GAAGATGAAAGCGAAGATCGTATTTATTGGCAGAAACATGATAAAGTGGTGCTGAGCGTG
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ATTGCGGGCAAACTGAAAGTGTGGCCGGAATATAAAAACCGTACCCTGTATGATAACACC
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ACCTATAGCCTGATTATTCTGGGCCTGGTGCTGAGCGATCGTGGCACCTATAGCTGCGTG
8+
GTGCAGAAAAAAGAACGTGGCACCTATGAAGTGAAACATCTGGCGCTGGTGAAACTGAGC
9+
ATTAAAGCGGATTTTAGCACCCCGAACATTACCGAAAGCGGCAACCCGAGCGCGGATACC
10+
AAACGTATTACCTGCTTTGCGAGCGGCGGCTTTCCGAAACCGCGTTTTAGCTGGCTGGAA
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AACGGCCGTGAACTGCCGGGCATTAACACCACCATTAGCCAGGATCCGGAAAGCGAACTG
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TATACCATTAGCAGCCAGCTGGATTTTAACACCACCCGTAACCATACCATTAAATGCCTG
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ATTAAATATGGCGATGCGCATGTGAGCGAAGATTTTACCTGGGAAAAACCGCCGGAAGAT
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CCGCCGGATAGCAAAAACACCCTGGTGCTGTTTGGCGCGGGCTTTGGCGCGGTGATTACC
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GTGGTGGTGATTGTGGTGATTATTAAATGCTTTTGCAAACATCGTAGCTGCTTTCGTCGT
16+
AACGAAGCGAGCCGTGAAACCAACAACAGCCTGACCTTTGGCCCGGAAGAAGCGCTGGCG
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GAACAGACCGTGTTTCTGTAA

‎benchmark_sequences/HFC/CDK1_dna.fasta‎

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>NM_001786.5 Homo sapiens cyclin dependent kinase 1 (CDK1), transcript variant 1, mRNA
2+
ATGGAAGATTATACCAAAATTGAAAAAATTGGCGAAGGCACCTATGGCGTGGTGTATAAA
3+
GGCCGTCATAAAACCACCGGCCAGGTGGTGGCGATGAAAAAAATTCGTCTGGAAAGCGAA
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GAAGAAGGCGTGCCGAGCACCGCGATTCGTGAAATTAGCCTGCTGAAAGAACTGCGTCAT
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CCGAACATTGTGAGCCTGCAGGATGTGCTGATGCAGGATAGCCGTCTGTATCTGATTTTT
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GAATTTCTGAGCATGGATCTGAAAAAATATCTGGATAGCATTCCGCCGGGCCAGTATATG
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GATAGCAGCCTGGTGAAAAGCTATCTGTATCAGATTCTGCAGGGCATTGTGTTTTGCCAT
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AGCCGTCGTGTGCTGCATCGTGATCTGAAACCGCAGAACCTGCTGATTGATGATAAAGGC
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ACCATTAAACTGGCGGATTTTGGCCTGGCGCGTGCGTTTGGCATTCCGATTCGTGTGTAT
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ACCCATGAAGTGGTGACCCTGTGGTATCGTAGCCCGGAAGTGCTGCTGGGCAGCGCGCGT
11+
TATAGCACCCCGGTGGATATTTGGAGCATTGGCACCATTTTTGCGGAACTGGCGACCAAA
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AAACCGCTGTTTCATGGCGATAGCGAAATTGATCAGCTGTTTCGTATTTTTCGTGCGCTG
13+
GGCACCCCGAACAACGAAGTGTGGCCGGAAGTGGAAAGCCTGCAGGATTATAAAAACACC
14+
TTTCCGAAATGGAAACCGGGCAGCCTGGCGAGCCATGTGAAAAACCTGGATGAAAACGGC
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CTGGATCTGCTGAGCAAAATGCTGATTTATGATCCGGCGAAACGTATTAGCGGCAAAATG
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GCGCTGAACCATCCGTATTTTAACGATCTGGATAACCAGATTAAAAAAATGTAA

‎benchmark_sequences/HFC/CEBPZ_dna.fasta‎

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>NM_005760.3 Homo sapiens CCAAT enhancer binding protein zeta (CEBPZ), mRNA
2+
ATGGCGGCGGTGAAAGAACCGCTGGAATTTCATGCGAAACGTCCGTGGCGTCCGGAAGAA
3+
GCGGTGGAAGATCCGGATGAAGAAGATGAAGATAACACCAGCGAAGCGGAAAACGGCTTT
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AGCCTGGAAGAAGTGCTGCGTCTGGGCGGCACCAAACAGGATTATCTGATGCTGGCGACC
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CTGGATGAAAACGAAGAAGTGATTGATGGCGGCAAAAAAGGCGCGATTGATGATCTGCAG
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CAGGGCGAACTGGAAGCGTTTATTCAGAACCTGAACCTGGCGAAATATACCAAAGCGAGC
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CTGGTGGAAGAAGATGAACCGGCGGAAAAAGAAAACAGCAGCAAAAAAGAAGTGAAAATT
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CCGAAAATTAACAACAAAAACACCGCGGAAAGCCAGCGTACCAGCGTGAACAAAGTGAAA
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AACAAAAACCGTCCGGAACCGCATAGCGATGAAAACGGCAGCACCACCCCGAAAGTGAAA
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AAAGATAAACAGAACATTTTTGAATTTTTTGAACGTCAGACCCTGCTGCTGCGTCCGGGC
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GGCAAATGGTATGATCTGGAATATAGCAACGAATATAGCCTGAAACCGCAGCCGCAGGAT
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GTGGTGAGCAAATATAAAACCCTGGCGCAGAAACTGTATCAGCATGAAATTAACCTGTTT
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AAAAGCAAAACCAACAGCCAGAAAGGCGCGAGCAGCACCTGGATGAAAGCGATTGTGAGC
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AGCGGCACCCTGGGCGATCGTATGGCGGCGATGATTCTGCTGATTCAGGATGATGCGGTG
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CATACCCTGCAGTTTGTGGAAACCCTGGTGAACCTGGTGAAAAAAAAAGGCAGCAAACAG
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CAGTGCCTGATGGCGCTGGATACCTTTAAAGAACTGCTGATTACCGATCTGCTGCCGGAT
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AACCGTAAACTGCGTATTTTTAGCCAGCGTCCGTTTGATAAACTGGAACAGCTGAGCAGC
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GGCAACAAAGATAGCCGTGATCGTCGTCTGATTCTGTGGTATTTTGAACATCAGCTGAAA
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CATCTGGTGGCGGAATTTGTGCAGGTGCTGGAAACCCTGAGCCATGATACCCTGGTGACC
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ACCAAAACCCGTGCGCTGACCGTGGCGCATGAACTGCTGTGCAACAAACCGGAAGAAGAA
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AAAGCGCTGCTGGTGCAGGTGGTGAACAAACTGGGCGATCCGCAGAACCGTATTGCGACC
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AAAGCGAGCCATCTGCTGGAAACCCTGCTGTGCAAACATCCGAACATGAAAGGCGTGGTG
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AGCGGCGAAGTGGAACGTCTGCTGTTTCGTAGCAACATTAGCAGCAAAGCGCAGTATTAT
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GCGATTTGCTTTCTGAACCAGATGGCGCTGAGCCATGAAGAAAGCGAACTGGCGAACAAA
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CTGATTACCGTGTATTTTTGCTTTTTTCGTACCTGCGTGAAAAAAAAAGATGTGGAAAGC
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AAAATGCTGAGCGCGCTGCTGACCGGCGTGAACCGTGCGTATCCGTATAGCCAGACCGGC
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GATGATAAAGTGCGTGAACAGATTGATACCCTGTTTAAAGTGCTGCATATTGTGAACTTT
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AACACCAGCGTGCAGGCGCTGATGCTGCTGTTTCAGGTGATGAACAGCCAGCAGACCATT
29+
AGCGATCGTTATTATACCGCGCTGTATCGTAAAATGCTGGATCCGGGCCTGATGACCTGC
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AGCAAACAGGCGATGTTTCTGAACCTGGTGTATAAAAGCCTGAAAGCGGATATTGTGCTG
31+
CGTCGTGTGAAAGCGTTTGTGAAACGTCTGCTGCAGGTGACCTGCCAGCAGATGCCGCCG
32+
TTTATTTGCGGCGCGCTGTATCTGGTGAGCGAAATTCTGAAAGCGAAACCGGGCCTGCGT
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AGCCAGCTGGATGATCATCCGGAAAGCGATGATGAAGAAAACTTTATTGATGCGAACGAT
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GATGAAGATATGGAAAAATTTACCGATGCGGATAAAGAAACCGAAATTGTGAAAAAACTG
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GAAACCGAAGAAACCGTGCCGGAAACCGATGTGGAAACCAAAAAACCGGAAGTGGCGAGC
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TGGGTGCATTTTGATAACCTGAAAGGCGGCAAACAGCTGAACAAATATGATCCGTTTAGC
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CGTAACCCGCTGTTTTGCGGCGCGGAAAACACCAGCCTGTGGGAACTGAAAAAACTGAGC
38+
GTGCATTTTCATCCGAGCGTGGCGCTGTTTGCGAAAACCATTCTGCAGGGCAACTATATT
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CAGTATAGCGGCGATCCGCTGCAGGATTTTACCCTGATGCGTTTTCTGGATCGTTTTGTG
40+
TATCGTAACCCGAAACCGCATAAAGGCAAAGAAAACACCGATAGCGTGGTGATGCAGCCG
41+
AAACGTAAACATTTTATTAAAGATATTCGTCATCTGCCGGTGAACAGCAAAGAATTTCTG
42+
GCGAAAGAAGAAAGCCAGATTCCGGTGGATGAAGTGTTTTTTCATCGTTATTATAAAAAA
43+
GTGGCGGTGAAAGAAAAACAGAAACGTGATGCGGATGAAGAAAGCATTGAAGATGTGGAT
44+
GATGAAGAATTTGAAGAACTGATTGATACCTTTGAAGATGATAACTGCTTTAGCAGCGGC
45+
AAAGATGATATGGATTTTGCGGGCAACGTGAAAAAACGTACCAAAGGCGCGAAAGATAAC
46+
ACCCTGGATGAAGATAGCGAAGGCAGCGATGATGAACTGGGCAACCTGGATGATGATGAA
47+
GTGAGCCTGGGCAGCATGGATGATGAAGAATTTGCGGAAGTGGATGAAGATGGCGGCACC
48+
TTTATGGATGTGCTGGATGATGAAAGCGAAAGCGTGCCGGAACTGGAAGTGCATAGCAAA
49+
GTGAGCACCAAAAAAAGCAAACGTAAAGGCACCGATGATTTTGATTTTGCGGGCAGCTTT
50+
CAGGGCCCGCGTAAAAAAAAACGTAACCTGAACGATAGCAGCCTGTTTGTGAGCGCGGAA
51+
GAATTTGGCCATCTGCTGGATGAAAACATGGGCAGCAAATTTGATAACATTGGCATGAAC
52+
GCGATGGCGAACAAAGATAACGCGAGCCTGAAACAGCTGCGTTGGGAAGCGGAACGTGAT
53+
GATTGGCTGCATAACCGTGATGCGAAAAGCATTATTAAAAAAAAAAAACATTTTAAAAAA
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AAACGTATTAAAACCACCCAGAAAACCAAAAAACAGCGTAAATAA

‎benchmark_sequences/HFC/CLN3_dna.fasta‎

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>NM_000086.2 Homo sapiens CLN3 lysosomal/endosomal transmembrane protein, battenin (CLN3), transcript variant 2, mRNA
2+
ATGGGCGGCTGCGCGGGCAGCCGTCGTCGTTTTAGCGATAGCGAAGGCGAAGAAACCGTG
3+
CCGGAACCGCGTCTGCCGCTGCTGGATCATCAGGGCGCGCATTGGAAAAACGCGGTGGGC
4+
TTTTGGCTGCTGGGCCTGTGCAACAACTTTAGCTATGTGGTGATGCTGAGCGCGGCGCAT
5+
GATATTCTGAGCCATAAACGTACCAGCGGCAACCAGAGCCATGTGGATCCGGGCCCGACC
6+
CCGATTCCGCATAACAGCAGCAGCCGTTTTGATTGCAACAGCGTGAGCACCGCGGCGGTG
7+
CTGCTGGCGGATATTCTGCCGACCCTGGTGATTAAACTGCTGGCGCCGCTGGGCCTGCAT
8+
CTGCTGCCGTATAGCCCGCGTGTGCTGGTGAGCGGCATTTGCGCGGCGGGCAGCTTTGTG
9+
CTGGTGGCGTTTAGCCATAGCGTGGGCACCAGCCTGTGCGGCGTGGTGTTTGCGAGCATT
10+
AGCAGCGGCCTGGGCGAAGTGACCTTTCTGAGCCTGACCGCGTTTTATCCGCGTGCGGTG
11+
ATTAGCTGGTGGAGCAGCGGCACCGGCGGCGCGGGCCTGCTGGGCGCGCTGAGCTATCTG
12+
GGCCTGACCCAGGCGGGCCTGAGCCCGCAGCAGACCCTGCTGAGCATGCTGGGCATTCCG
13+
GCGCTGCTGCTGGCGAGCTATTTTCTGCTGCTGACCAGCCCGGAAGCGCAGGATCCGGGC
14+
GGCGAAGAAGAAGCGGAAAGCGCGGCGCGTCAGCCGCTGATTCGTACCGAAGCGCCGGAA
15+
AGCAAACCGGGCAGCAGCAGCAGCCTGAGCCTGCGTGAACGTTGGACCGTGTTTAAAGGC
16+
CTGCTGTGGTATATTGTGCCGCTGGTGGTGGTGTATTTTGCGGAATATTTTATTAACCAG
17+
GGCCTGTTTGAACTGCTGTTTTTTTGGAACACCAGCCTGAGCCATGCGCAGCAGTATCGT
18+
TGGTATCAGATGCTGTATCAGGCGGGCGTGTTTGCGAGCCGTAGCAGCCTGCGTTGCTGC
19+
CGTATTCGTTTTACCTGGGCGCTGGCGCTGCTGCAGTGCCTGAACCTGGTGTTTCTGCTG
20+
GCGGATGTGTGGTTTGGCTTTCTGCCGAGCATTTATCTGGTGTTTCTGATTATTCTGTAT
21+
GAAGGCCTGCTGGGCGGCGCGGCGTATGTGAACACCTTTCATAACATTGCGCTGGAAACC
22+
AGCGATGAACATCGTGAATTTGCGATGGCGGCGACCTGCATTAGCGATACCCTGGGCATT
23+
AGCCTGAGCGGCCTGCTGGCGCTGCCGCTGCATGATTTTCTGTGCCAGCTGAGCTAA

‎benchmark_sequences/HFC/CREB1_dna.fasta‎

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>NM_004379.5 Homo sapiens cAMP responsive element binding protein 1 (CREB1), transcript variant 1, mRNA
2+
ATGACCATGGAAAGCGGCGCGGAAAACCAGCAGAGCGGCGATGCGGCGGTGACCGAAGCG
3+
GAAAACCAGCAGATGACCGTGCAGGCGCAGCCGCAGATTGCGACCCTGGCGCAGGTGAGC
4+
ATGCCGGCGGCGCATGCGACCAGCAGCGCGCCGACCGTGACCCTGGTGCAGCTGCCGAAC
5+
GGCCAGACCGTGCAGGTGCATGGCGTGATTCAGGCGGCGCAGCCGAGCGTGATTCAGAGC
6+
CCGCAGGTGCAGACCGTGCAGATTAGCACCATTGCGGAAAGCGAAGATAGCCAGGAAAGC
7+
GTGGATAGCGTGACCGATAGCCAGAAACGTCGTGAAATTCTGAGCCGTCGTCCGAGCTAT
8+
CGTAAAATTCTGAACGATCTGAGCAGCGATGCGCCGGGCGTGCCGCGTATTGAAGAAGAA
9+
AAAAGCGAAGAAGAAACCAGCGCGCCGGCGATTACCACCGTGACCGTGCCGACCCCGATT
10+
TATCAGACCAGCAGCGGCCAGTATATTGCGATTACCCAGGGCGGCGCGATTCAGCTGGCG
11+
AACAACGGCACCGATGGCGTGCAGGGCCTGCAGACCCTGACCATGACCAACGCGGCGGCG
12+
ACCCAGCCGGGCACCACCATTCTGCAGTATGCGCAGACCACCGATGGCCAGCAGATTCTG
13+
GTGCCGAGCAACCAGGTGGTGGTGCAGGCGGCGAGCGGCGATGTGCAGACCTATCAGATT
14+
CGTACCGCGCCGACCAGCACCATTGCGCCGGGCGTGGTGATGGCGAGCAGCCCGGCGCTG
15+
CCGACCCAGCCGGCGGAAGAAGCGGCGCGTAAACGTGAAGTGCGTCTGATGAAAAACCGT
16+
GAAGCGGCGCGTGAATGCCGTCGTAAAAAAAAAGAATATGTGAAATGCCTGGAAAACCGT
17+
GTGGCGGTGCTGGAAAACCAGAACAAAACCCTGATTGAAGAACTGAAAGCGCTGAAAGAT
18+
CTGTATTGCCATAAAAGCGATTAA

‎benchmark_sequences/HFC/CSNK1A1_dna.fasta‎

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>NM_001892.6 Homo sapiens casein kinase 1 alpha 1 (CSNK1A1), transcript variant 2, mRNA
2+
ATGGCGAGCAGCAGCGGCAGCAAAGCGGAATTTATTGTGGGCGGCAAATATAAACTGGTG
3+
CGTAAAATTGGCAGCGGCAGCTTTGGCGATATTTATCTGGCGATTAACATTACCAACGGC
4+
GAAGAAGTGGCGGTGAAACTGGAAAGCCAGAAAGCGCGTCATCCGCAGCTGCTGTATGAA
5+
AGCAAACTGTATAAAATTCTGCAGGGCGGCGTGGGCATTCCGCATATTCGTTGGTATGGC
6+
CAGGAAAAAGATTATAACGTGCTGGTGATGGATCTGCTGGGCCCGAGCCTGGAAGATCTG
7+
TTTAACTTTTGCAGCCGTCGTTTTACCATGAAAACCGTGCTGATGCTGGCGGATCAGATG
8+
ATTAGCCGTATTGAATATGTGCATACCAAAAACTTTATTCATCGTGATATTAAACCGGAT
9+
AACTTTCTGATGGGCATTGGCCGTCATTGCAACAAACTGTTTCTGATTGATTTTGGCCTG
10+
GCGAAAAAATATCGTGATAACCGTACCCGTCAGCATATTCCGTATCGTGAAGATAAAAAC
11+
CTGACCGGCACCGCGCGTTATGCGAGCATTAACGCGCATCTGGGCATTGAACAGAGCCGT
12+
CGTGATGATATGGAAAGCCTGGGCTATGTGCTGATGTATTTTAACCGTACCAGCCTGCCG
13+
TGGCAGGGCCTGAAAGCGGCGACCAAAAAACAGAAATATGAAAAAATTAGCGAAAAAAAA
14+
ATGAGCACCCCGGTGGAAGTGCTGTGCAAAGGCTTTCCGGCGGAATTTGCGATGTATCTG
15+
AACTATTGCCGTGGCCTGCGTTTTGAAGAAGCGCCGGATTATATGTATCTGCGTCAGCTG
16+
TTTCGTATTCTGTTTCGTACCCTGAACCATCAGTATGATTATACCTTTGATTGGACCATG
17+
CTGAAACAGAAAGCGGCGCAGCAGGCGGCGAGCAGCAGCGGCCAGGGCCAGCAGGCGCAG
18+
ACCCCGACCGGCAAACAGACCGATAAAACCAAAAGCAACATGAAAGGCTTTTAA

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