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Commit 3946579

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author
RJain12
committed
added brute force algorithm
1 parent cb95d50 commit 3946579

45 files changed

Lines changed: 1419 additions & 42 deletions

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‎benchmark_sequences/brute/AKT1_dna.fasta‎

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>NM_005163.2 Homo sapiens AKT serine/threonine kinase 1 (AKT1), transcript variant 1, mRNA
2+
ATGAGTGATGTCGCCATAGTGAAAGAAGGGTGGTTACACAAACGGGGCGAATATATTAAG
3+
ACTTGGCGTCCCAGGTACTTTCTGCTCAAAAATGATGGGACCTTTATTGGTTATAAAGAG
4+
CGACCTCAAGATGTGGACCAGCGCGAAGCACCTCTCAACAATTTTTCTGTCGCGCAGTGC
5+
CAGCTAATGAAAACCGAGAGACCTCGCCCCAACACGTTCATAATTAGGTGTTTACAGTGG
6+
ACAACGGTCATCGAGCGGACTTTCCACGTCGAAACCCCAGAAGAGAGAGAGGAATGGACT
7+
ACTGCTATACAGACGGTTGCCGATGGTTTAAAAAAACAAGAGGAGGAAGAGATGGACTTT
8+
CGCTCCGGATCCCCTTCGGACAATAGCGGCGCAGAGGAAATGGAGGTGAGCCTGGCAAAG
9+
CCAAAACACAGGGTGACCATGAACGAGTTCGAATACCTTAAACTATTAGGTAAGGGAACA
10+
TTCGGTAAGGTAATACTTGTAAAAGAGAAAGCAACCGGTCGTTATTATGCGATGAAAATT
11+
CTTAAGAAGGAGGTTATCGTCGCAAAGGATGAAGTTGCACACACCCTAACGGAAAACCGT
12+
GTTTTGCAGAATTCAAGGCATCCGTTTTTAACCGCCTTAAAGTATAGTTTCCAAACGCAT
13+
GACCGGTTATGTTTCGTGATGGAATATGCAAATGGGGGAGAGCTATTCTTTCATCTCTCC
14+
CGAGAACGGGTGTTCAGCGAGGATCGTGCACGATTCTACGGCGCCGAAATTGTGAGTGCC
15+
CTAGACTACCTTCATTCGGAAAAAAACGTCGTGTACCGCGACCTCAAGTTGGAGAACCTG
16+
ATGCTGGATAAGGACGGTCACATTAAAATCACAGACTTCGGGCTTTGCAAAGAAGGGATC
17+
AAGGACGGTGCAACGATGAAAACCTTCTGCGGCACCCCGGAATACCTGGCTCCTGAGGTG
18+
CTGGAAGATAATGATTACGGACGTGCCGTAGACTGGTGGGGCTTGGGCGTTGTTATGTAT
19+
GAGATGATGTGTGGTCGTCTGCCGTTTTATAACCAGGATCATGAAAAATTATTCGAGCTG
20+
ATTCTGATGGAAGAAATTCGATTCCCCAGAACACTGGGCCCCGAAGCGAAATCTCTTCTT
21+
AGCGGCCTCCTGAAAAAAGATCCAAAACAAAGGCTTGGTGGTGGAAGTGAGGATGCTAAG
22+
GAAATCATGCAGCACCGGTTCTTTGCTGGCATCGTGTGGCAGCATGTCTACGAAAAGAAA
23+
CTGAGCCCGCCGTTTAAGCCTCAAGTTACATCCGAGACCGATACCCGGTATTTCGATGAG
24+
GAGTTTACGGCACAGATGATCACGATCACGCCTCCGGACCAGGATGATTCCATGGAATGT
25+
GTTGACTCAGAGCGACGTCCTCATTTCCCTCAGTTTTCGTACTCGGCCAGTGGGACCGCC
26+
TAA

‎benchmark_sequences/brute/BIRC5_dna.fasta‎

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>NM_001012271.2 Homo sapiens baculoviral IAP repeat containing 5 (BIRC5), transcript variant 3, mRNA
2+
ATGGGTGCCCCCACTTTGCCCCCTGCGTGGCAGCCGTTCTTGAAAGATCATCGTATTTCC
3+
ACATTCAAAAACTGGCCATTCCTTGAAGGGTGCGCATGCACGCCGGAACGTATGGCGGAG
4+
GCGGGCTTTATTCATTGTCCTACAGAAAACGAACCGGACTTGGCACAGTGTTTCTTTTGT
5+
TTTAAAGAACTAGAAGGGTGGGAGCCAGATGATGATCCAATTGGCCCTGGAACTGTCGCT
6+
TACGCGTGTAATACTTCCACCCTGGGCGGCAGAGGGGGCCGGATTACGCGGGAAGAACAT
7+
AAAAAACATTCTTCGGGCTGTGCTTTTCTCAGCGTGAAAAAGCAGTTTGAAGAACTGACT
8+
CTAGGTGAATTTTTAAAATTAGATCGTGAGCGTGCGAAAAACAAGATTGCCAAGGAAACT
9+
AACAACAAAAAAAAGGAATTTGAAGAAACGGCTGAGAAAGTCCGCCGTGCGATAGAACAG
10+
CTGGCGGCCATGGACTAG

‎benchmark_sequences/brute/BRAF1_dna.fasta‎

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>NM_004333.6 Homo sapiens B-Raf proto-oncogene, serine/threonine kinase (BRAF), transcript variant 1, mRNA
2+
ATGGCGGCATTGTCGGGAGGTGGTGGCGGCGGAGCTGAACCAGGCCAGGCGTTATTCAAC
3+
GGTGATATGGAGCCTGAGGCGGGTGCGGGGGCCGGTGCCGCCGCATCATCGGCCGCGGAT
4+
CCGGCTATTCCTGAAGAGGTGTGGAACATTAAGCAAATGATCAAGCTCACTCAGGAGCAT
5+
ATCGAAGCGCTGCTGGATAAATTTGGTGGCGAACACAATCCACCGAGTATTTACTTAGAA
6+
GCGTATGAAGAATATACTTCCAAACTTGATGCACTTCAACAACGTGAACAACAACTGCTG
7+
GAGTCTCTCGGCAACGGAACAGACTTTTCAGTGTCCAGCTCGGCTTCAATGGATACGGTG
8+
ACCTCGAGTTCCTCGAGCAGCTTGAGTGTGCTGCCTAGCTCACTGAGCGTGTTCCAGAAT
9+
CCAACGGACGTAGCACGATCAAATCCCAAATCACCACAGAAGCCCATAGTGCGCGTTTTC
10+
CTGCCCAACAAACAGCGGACTGTGGTCCCGGCGAGATGTGGGGTCACTGTTCGGGATTCA
11+
CTAAAGAAAGCACTTATGATGCGAGGTCTCATCCCTGAATGTTGTGCGGTATACCGTATA
12+
CAAGACGGTGAGAAAAAGCCGATTGGATGGGATACTGACATATCTTGGCTGACAGGAGAA
13+
GAACTCCATGTCGAGGTCCTAGAGAACGTGCCTCTCACAACTCACAATTTCGTCCGCAAG
14+
ACTTTTTTTACACTCGCTTTTTGTGACTTTTGCAGAAAACTGCTCTTCCAGGGGTTTCGG
15+
TGTCAGACATGTGGCTATAAATTTCATCAGCGTTGTAGCACGGAGGTCCCCCTGATGTGC
16+
GTAAATTACGACCAACTTGACCTGTTGTTCGTGTCTAAATTTTTCGAGCACCATCCTATT
17+
CCACAGGAGGAGGCAAGCCTGGCAGAGACTGCGCTGACGTCCGGTTCCAGCCCATCTGCC
18+
CCTGCGAGCGATAGCATAGGTCCTCAGATCCTTACTAGCCCAAGTCCTTCGAAATCTATT
19+
CCTATCCCGCAACCTTTTCGACCTGCGGACGAAGATCATAGAAACCAGTTCGGCCAGCGC
20+
GATCGATCCTCGAGCGCACCAAATGTACATATTAACACGATAGAGCCTGTCAACATTGAC
21+
GACCTAATCCGAGACCAGGGGTTTCGCGGCGACGGAGGCAGTACCACGGGCTTGAGCGCG
22+
ACCCCGCCTGCCTCGCTACCTGGCTCTCTCACAAATGTTAAGGCGTTGCAAAAAAGCCCG
23+
GGCCCACAGCGCGAACGGAAATCTTCGTCGTCGAGCGAGGATAGGAACCGAATGAAAACC
24+
CTAGGCCGGAGAGACTCAAGTGATGACTGGGAGATTCCCGATGGTCAGATCACCGTGGGC
25+
CAGCGGATCGGGTCCGGATCTTTTGGAACTGTGTATAAAGGAAAATGGCATGGTGATGTC
26+
GCTGTTAAAATGTTGAATGTCACTGCACCCACCCCTCAGCAGTTACAAGCGTTCAAAAAT
27+
GAGGTAGGCGTTCTCCGAAAAACGCGACATGTGAATATCCTCTTATTTATGGGTTATAGC
28+
ACGAAACCCCAGCTCGCCATCGTTACTCAGTGGTGCGAAGGGTCCTCTCTCTACCATCAC
29+
CTCCACATTATCGAGACTAAATTCGAGATGATTAAATTAATCGATATAGCGCGACAGACA
30+
GCCCAGGGGATGGACTATTTGCATGCTAAGTCCATCATCCACCGAGATCTCAAATCAAAT
31+
AATATATTCCTCCATGAAGATCTTACGGTGAAGATTGGTGATTTCGGCCTGGCCACTGTG
32+
AAGAGCCGGTGGTCCGGATCACATCAGTTTGAGCAACTTTCAGGTTCCATACTTTGGATG
33+
GCGCCAGAAGTGATCAGAATGCAAGATAAAAACCCATATAGTTTCCAGTCAGACGTGTAT
34+
GCATTTGGGATCGTTCTCTATGAACTTATGACTGGACAGTTGCCATACTCTAATATAAAT
35+
AATCGGGATCAGATAATTTTCATGGTTGGTCGTGGCTACCTCTCACCCGATCTTTCAAAA
36+
GTCAGATCAAATTGTCCCAAGGCGATGAAAAGATTGATGGCTGAATGCCTGAAGAAGAAA
37+
AGGGATGAACGACCGCTGTTCCCTCAAATACTCGCATCTATCGAGCTGCTAGCCCGATCT
38+
CTGCCGAAGATTCATCGTAGCGCGAGTGAGCCGTCGTTGAACCGCGCGGGATTCCAGACG
39+
GAGGACTTCAGCTTATACGCCTGCGCATCGCCTAAAACACCGATCCAAGCGGGTGGGTAC
40+
GGGGCCTTCCCGGTGCACTAG

‎benchmark_sequences/brute/CAV1_dna.fasta‎

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>NM_001753.5 Homo sapiens caveolin 1 (CAV1), transcript variant 1, mRNA
2+
ATGTCAGGAGGTAAGTATGTCGATTCTGAAGGTCATCTTTATACAGTCCCTATTCGTGAG
3+
CAGGGCAATATTTATAAACCGAACAATAAAGCTATGGCTGATGAACTGTCGGAAAAGCAG
4+
GTATATGACGCGCACACAAAGGAAATAGATCTGGTTAATCGTGACCCGAAACATCTGAAC
5+
GATGACGTCGTCAAGATTGATTTTGAGGACGTAATAGCGGAGCCGGAGGGGACACATAGT
6+
TTTGATGGCATATGGAAAGCCAGTTTTACAACCTTTACGGTGACGAAATACTGGTTCTAC
7+
CGGTTACTTTCCGCACTATTTGGTATTCCTATGGCTCTTATCTGGGGCATCTATTTCGCG
8+
ATCCTGAGCTTCTTACACATCTGGGCCGTAGTTCCGTGCATTAAGTCCTTCCTGATCGAG
9+
ATCCAGTGTATTTCGAGAGTGTATTCGATTTATGTCCACACCGTTTGCGACCCACTGTTT
10+
GAAGCAGTTGGAAAAATTTTCAGCAACGTACGTATTAATCTGCAGAAAGAGATCTGA

‎benchmark_sequences/brute/CD80_dna.fasta‎

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>NM_009855.2 Mus musculus CD80 antigen (Cd80), transcript variant 2, mRNA
2+
ATGGCTTGCAATTGTCAACTTATGCAGGATACTCCTTTGCTCAAATTCCCCTGTCCGCGT
3+
CTTATCTTGTTATTTGTTCTCCTGATTCGTTTGAGTCAGGTTTCAAGCGACGTGGATGAG
4+
CAACTATCCAAGTCCGTTAAAGACAAAGTTCTGCTTCCTTGCAGGTACAATAGTCCACAC
5+
GAAGACGAAAGTGAGGATAGGATTTATTGGCAGAAGCATGATAAAGTTGTGCTGAGCGTA
6+
ATCGCGGGCAAACTCAAAGTCTGGCCTGAGTACAAGAACCGCACTTTATATGATAATACC
7+
ACCTACTCATTGATCATCCTTGGTCTAGTGTTGTCTGATAGGGGTACCTACTCCTGTGTG
8+
GTTCAGAAGAAAGAACGTGGCACGTACGAGGTGAAACATCTCGCTTTAGTCAAACTTTCT
9+
ATCAAAGCCGATTTCTCTACCCCCAATATTACAGAGTCAGGGAACCCTAGTGCTGATACA
10+
AAGCGGATCACGTGCTTCGCTTCAGGGGGCTTTCCTAAACCGCGTTTTTCCTGGCTCGAA
11+
AACGGGCGAGAATTACCAGGTATTAATACTACGATTAGTCAGGACCCAGAATCAGAACTG
12+
TATACTATAAGCTCGCAACTGGACTTCAACACGACCCGTAACCACACCATTAAATGTTTA
13+
ATCAAATACGGCGACGCGCACGTATCCGAGGACTTCACATGGGAGAAACCGCCAGAAGAT
14+
CCGCCGGACAGCAAGAATACGCTTGTTCTTTTCGGCGCAGGCTTCGGAGCGGTTATTACT
15+
GTGGTTGTGATCGTGGTAATCATCAAATGCTTCTGCAAACATCGTTCTTGCTTTCGTCGT
16+
AACGAGGCGTCACGGGAAACAAATAACTCCCTGACTTTTGGCCCGGAAGAAGCACTGGCC
17+
GAACAAACTGTGTTCTTATAG

‎benchmark_sequences/brute/CDK1_dna.fasta‎

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>NM_001786.5 Homo sapiens cyclin dependent kinase 1 (CDK1), transcript variant 1, mRNA
2+
ATGGAAGACTACACGAAAATCGAAAAGATCGGTGAGGGTACGTACGGCGTTGTTTACAAA
3+
GGTCGCCATAAGACGACAGGCCAAGTGGTGGCGATGAAAAAGATCCGTTTGGAGAGCGAG
4+
GAAGAAGGTGTTCCCTCTACGGCTATCAGGGAAATTAGTCTCCTGAAAGAGCTGAGGCAT
5+
CCGAATATAGTTAGTTTACAAGATGTCTTGATGCAGGATTCTCGTCTGTACTTAATCTTT
6+
GAATTTCTTTCTATGGACTTGAAAAAGTATTTAGACAGTATACCGCCCGGGCAGTATATG
7+
GATAGTAGTTTGGTAAAAAGTTATTTGTACCAGATTTTACAGGGCATAGTGTTCTGCCAC
8+
AGCCGACGTGTCCTCCACAGGGATTTGAAACCGCAGAACCTGCTGATAGACGATAAAGGA
9+
ACGATAAAACTGGCTGATTTTGGCCTGGCACGTGCATTTGGTATACCCATAAGGGTCTAT
10+
ACGCATGAGGTTGTGACCTTATGGTATAGGTCTCCCGAAGTCTTATTGGGGTCAGCCCGT
11+
TACTCCACGCCCGTGGACATCTGGTCCATTGGAACAATATTTGCCGAGTTAGCCACGAAA
12+
AAGCCGCTTTTCCATGGTGACAGTGAAATCGATCAATTGTTTCGTATTTTCCGTGCCTTG
13+
GGTACCCCCAATAATGAAGTTTGGCCTGAAGTAGAGAGTCTGCAGGACTACAAAAATACC
14+
TTTCCGAAATGGAAACCCGGCTCGCTGGCTAGCCATGTGAAAAACCTGGATGAAAATGGT
15+
TTAGATTTACTCTCGAAAATGCTCATTTATGATCCAGCCAAAAGAATATCAGGAAAAATG
16+
GCGTTAAACCATCCTTACTTTAACGACCTGGACAACCAGATTAAGAAAATGTAA

‎benchmark_sequences/brute/CEBPZ_dna.fasta‎

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>NM_005760.3 Homo sapiens CCAAT enhancer binding protein zeta (CEBPZ), mRNA
2+
ATGGCGGCCGTTAAAGAACCGCTTGAATTCCACGCAAAACGTCCGTGGAGACCTGAGGAG
3+
GCAGTCGAAGACCCTGATGAGGAAGATGAAGACAATACGTCCGAGGCCGAGAATGGCTTC
4+
AGCTTAGAAGAGGTGTTGCGCCTGGGCGGCACAAAGCAGGACTATCTAATGCTCGCTACA
5+
CTAGATGAGAATGAGGAGGTTATTGACGGAGGGAAGAAGGGAGCCATAGATGACCTTCAG
6+
CAAGGAGAACTGGAGGCATTCATTCAGAACCTGAATTTAGCGAAATATACAAAAGCTAGC
7+
CTTGTAGAAGAAGACGAGCCAGCCGAAAAAGAAAACAGCAGCAAAAAAGAAGTAAAAATA
8+
CCAAAAATCAACAATAAAAATACGGCAGAAAGCCAGCGCACTAGTGTAAACAAGGTGAAA
9+
AACAAAAATCGTCCAGAACCGCACTCTGACGAAAACGGGAGCACTACACCGAAAGTTAAA
10+
AAGGATAAACAGAACATTTTTGAGTTTTTCGAAAGGCAAACGCTCTTGCTGAGGCCTGGT
11+
GGCAAATGGTACGATTTAGAGTACTCAAATGAATATTCTTTAAAGCCCCAACCGCAGGAC
12+
GTTGTTTCGAAATACAAGACGTTGGCGCAAAAACTTTATCAACATGAGATTAATCTGTTC
13+
AAGTCAAAGACAAATAGCCAAAAGGGTGCGTCCAGCACCTGGATGAAGGCAATCGTCTCG
14+
TCCGGCACGCTCGGAGATCGGATGGCCGCCATGATACTCCTGATTCAGGATGATGCCGTT
15+
CATACTTTGCAGTTCGTCGAAACCTTAGTAAACCTCGTTAAGAAAAAGGGCTCAAAACAA
16+
CAATGCCTGATGGCGTTAGACACCTTTAAAGAATTACTAATTACGGATCTACTTCCAGAC
17+
AACCGAAAGTTACGGATATTTAGCCAGCGCCCATTTGACAAGCTAGAGCAGCTGTCCAGT
18+
GGAAATAAGGATTCTCGCGATCGTCGCCTGATCCTATGGTATTTCGAACATCAGTTGAAG
19+
CACTTGGTTGCCGAGTTTGTACAAGTATTAGAAACCCTGAGTCATGACACCCTTGTAACA
20+
ACCAAAACACGCGCTCTAACGGTTGCCCACGAACTCCTCTGCAACAAACCGGAGGAGGAA
21+
AAGGCGTTACTAGTGCAAGTAGTTAATAAACTTGGCGACCCGCAGAACCGCATTGCGACC
22+
AAGGCAAGCCACCTCCTCGAAACTCTACTTTGCAAGCACCCAAACATGAAGGGTGTTGTC
23+
AGCGGTGAAGTCGAACGACTGCTTTTTAGATCCAATATCTCGTCTAAGGCTCAGTACTAC
24+
GCAATCTGCTTCCTTAACCAGATGGCACTTTCCCATGAAGAGTCAGAGCTGGCCAATAAG
25+
CTGATAACTGTATACTTTTGTTTCTTTCGTACCTGCGTTAAGAAGAAAGATGTGGAATCT
26+
AAAATGTTGTCAGCCCTTTTGACCGGAGTTAACCGCGCGTACCCCTATAGCCAGACGGGT
27+
GATGATAAGGTGCGAGAGCAGATTGACACGTTATTCAAGGTATTACATATTGTAAACTTC
28+
AATACATCTGTTCAGGCCTTAATGCTCCTGTTCCAAGTAATGAACTCCCAGCAAACAATT
29+
TCAGACCGATATTACACGGCGCTATATCGTAAGATGTTGGACCCGGGCCTGATGACCTGT
30+
TCGAAACAAGCAATGTTTCTCAATCTGGTGTATAAGAGTCTGAAAGCTGATATAGTTTTA
31+
CGTCGTGTTAAAGCGTTTGTAAAACGGCTGCTGCAGGTTACGTGTCAACAGATGCCTCCT
32+
TTTATTTGTGGCGCGCTTTACCTAGTATCTGAAATTTTGAAGGCGAAACCGGGACTACGA
33+
TCGCAGCTAGATGATCATCCGGAGTCTGATGATGAAGAAAACTTCATCGATGCAAACGAT
34+
GACGAAGATATGGAGAAGTTTACGGACGCTGATAAAGAAACAGAAATCGTGAAAAAACTG
35+
GAGACGGAGGAGACCGTGCCAGAAACTGACGTGGAAACGAAGAAACCCGAGGTCGCGAGC
36+
TGGGTGCACTTCGATAATCTTAAGGGCGGCAAGCAGCTAAATAAGTATGACCCCTTTTCC
37+
CGTAATCCGTTGTTCTGTGGTGCTGAGAATACCAGTTTGTGGGAGCTGAAAAAGCTTTCT
38+
GTACATTTTCATCCTAGTGTAGCGCTGTTCGCTAAGACTATCCTTCAAGGTAACTACATT
39+
CAGTATTCCGGCGACCCCTTGCAAGATTTCACGCTAATGCGTTTTCTCGATCGTTTCGTA
40+
TATCGGAACCCTAAACCTCACAAGGGTAAGGAAAATACTGACTCGGTAGTCATGCAGCCC
41+
AAGCGCAAACACTTTATTAAAGACATCCGTCACCTGCCTGTAAACTCGAAGGAATTTCTG
42+
GCTAAGGAAGAGTCCCAAATCCCGGTAGACGAAGTGTTCTTCCACAGGTACTACAAAAAA
43+
GTTGCAGTAAAGGAGAAACAAAAGAGAGACGCCGATGAAGAGTCAATTGAAGACGTAGAC
44+
GATGAAGAGTTCGAAGAACTTATTGATACGTTCGAAGACGACAACTGTTTCTCATCTGGA
45+
AAAGACGACATGGACTTCGCGGGCAACGTAAAAAAACGAACAAAGGGCGCGAAAGATAAT
46+
ACCTTAGATGAGGATTCTGAAGGCTCAGATGACGAGCTGGGTAATCTCGACGATGATGAG
47+
GTCTCTCTGGGATCCATGGACGATGAGGAATTTGCGGAAGTAGATGAAGATGGCGGCACG
48+
TTTATGGATGTGCTAGATGATGAATCAGAATCTGTCCCAGAACTTGAGGTGCACTCCAAA
49+
GTAAGTACAAAGAAGAGTAAAAGGAAAGGCACGGACGACTTCGACTTTGCAGGCTCCTTT
50+
CAAGGTCCACGAAAGAAGAAGCGCAACTTAAACGATAGTAGTCTATTTGTATCCGCTGAA
51+
GAGTTCGGCCACTTGCTGGATGAGAACATGGGATCGAAATTTGACAACATCGGGATGAAT
52+
GCAATGGCTAACAAGGACAACGCGAGCTTGAAGCAATTAAGATGGGAAGCCGAGCGTGAC
53+
GACTGGCTTCACAATCGTGACGCAAAATCCATTATCAAGAAAAAGAAGCATTTTAAAAAA
54+
AAACGGATTAAAACTACACAAAAGACAAAGAAACAACGCAAATAG

‎benchmark_sequences/brute/CLN3_dna.fasta‎

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>NM_000086.2 Homo sapiens CLN3 lysosomal/endosomal transmembrane protein, battenin (CLN3), transcript variant 2, mRNA
2+
ATGGGAGGATGCGCTGGTTCCCGTCGCAGATTTTCGGATAGTGAAGGCGAGGAAACCGTA
3+
CCAGAACCGCGCTTACCCCTCTTGGACCATCAAGGCGCCCACTGGAAGAATGCAGTTGGT
4+
TTCTGGTTGTTGGGCCTGTGTAACAATTTCTCTTACGTTGTGATGTTATCGGCGGCACAC
5+
GACATCCTGTCCCATAAAAGGACATCCGGCAATCAGAGCCATGTAGACCCGGGTCCGACT
6+
CCCATTCCGCACAATAGCTCGAGCCGATTTGACTGCAACAGCGTATCTACAGCTGCCGTT
7+
TTACTGGCTGATATCCTACCGACGTTAGTAATAAAACTGCTTGCGCCCCTGGGTCTCCAC
8+
CTGTTACCGTATAGTCCGAGGGTGTTAGTATCAGGGATCTGCGCAGCCGGAAGCTTTGTA
9+
TTAGTGGCGTTTTCGCATAGCGTGGGGACCTCCCTTTGTGGCGTGGTTTTTGCGTCAATC
10+
AGCTCAGGCCTCGGCGAAGTTACGTTTTTGAGCCTTACCGCCTTCTATCCACGGGCCGTT
11+
ATCTCTTGGTGGTCATCAGGTACCGGTGGAGCAGGTCTGCTGGGCGCACTGAGTTATCTA
12+
GGACTCACCCAAGCCGGACTTTCTCCGCAGCAAACACTACTTTCCATGCTCGGTATTCCC
13+
GCTCTCCTCCTCGCTTCCTATTTTCTTTTGTTGACCAGTCCGGAAGCCCAAGATCCGGGT
14+
GGGGAGGAAGAAGCGGAAAGCGCTGCGCGTCAGCCTTTGATCCGCACAGAAGCACCTGAG
15+
TCTAAACCGGGCTCTTCATCATCCCTAAGCCTGCGGGAACGCTGGACTGTGTTTAAAGGC
16+
CTCCTATGGTACATTGTACCACTTGTGGTAGTCTATTTTGCTGAGTACTTTATTAACCAG
17+
GGGCTATTCGAACTCCTTTTCTTTTGGAACACCTCCCTGTCCCATGCTCAACAGTATCGA
18+
TGGTATCAGATGCTGTACCAGGCTGGCGTCTTCGCGTCGAGAAGCTCATTGAGATGCTGC
19+
CGGATTAGGTTCACCTGGGCGTTGGCCCTGCTGCAGTGTCTTAATTTGGTTTTTCTACTG
20+
GCGGATGTCTGGTTTGGTTTCCTTCCGAGCATATATCTGGTGTTTCTTATTATCTTATAT
21+
GAAGGACTCTTGGGCGGCGCAGCGTATGTTAACACATTTCACAACATCGCTCTGGAGACA
22+
TCAGACGAACATCGGGAATTCGCGATGGCTGCCACTTGTATAAGCGACACGTTAGGGATT
23+
TCGCTGAGTGGTCTCTTAGCACTCCCTCTTCACGATTTTTTGTGCCAGCTATCATAA

‎benchmark_sequences/brute/CREB1_dna.fasta‎

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1+
>NM_004379.5 Homo sapiens cAMP responsive element binding protein 1 (CREB1), transcript variant 1, mRNA
2+
ATGACCATGGAGAGTGGGGCAGAAAATCAGCAATCGGGAGATGCCGCCGTAACCGAAGCT
3+
GAGAATCAACAAATGACCGTACAGGCACAACCCCAAATTGCAACCCTCGCCCAGGTAAGC
4+
ATGCCTGCGGCGCACGCGACGTCCTCTGCACCGACCGTGACCCTAGTTCAGTTACCGAAT
5+
GGCCAAACTGTCCAAGTCCACGGCGTTATCCAGGCAGCTCAGCCGTCCGTGATTCAGAGT
6+
CCGCAGGTACAGACAGTGCAGATCAGTACTATTGCTGAAAGTGAGGATTCACAGGAGAGC
7+
GTGGATTCAGTAACAGACTCGCAGAAAAGAAGAGAAATTTTATCGCGAAGGCCGTCGTAT
8+
CGTAAGATATTGAATGATTTAAGCTCAGATGCTCCAGGTGTACCTAGAATCGAGGAAGAG
9+
AAAAGTGAAGAGGAAACTAGTGCTCCGGCAATCACTACAGTGACAGTACCGACGCCGATT
10+
TATCAAACCTCCTCGGGCCAATATATTGCCATTACGCAAGGAGGTGCCATTCAACTAGCA
11+
AACAATGGTACCGATGGGGTGCAGGGGCTGCAGACCCTGACAATGACGAATGCAGCTGCG
12+
ACCCAGCCGGGGACCACTATACTTCAATACGCCCAGACGACGGATGGGCAACAAATTCTT
13+
GTTCCGAGTAATCAGGTTGTGGTGCAAGCGGCCTCGGGTGATGTGCAAACCTACCAGATA
14+
CGTACAGCGCCAACTTCAACGATTGCCCCTGGAGTCGTCATGGCGTCAAGTCCTGCGCTC
15+
CCGACACAACCTGCTGAAGAGGCTGCCCGTAAACGCGAGGTTAGACTGATGAAAAACCGT
16+
GAAGCCGCTCGGGAATGTCGGCGCAAAAAGAAGGAATATGTTAAATGTCTTGAAAACCGG
17+
GTGGCCGTCCTGGAGAATCAAAACAAAACCCTGATCGAAGAACTGAAAGCGCTGAAAGAT
18+
CTCTACTGCCACAAATCCGACTAA

‎benchmark_sequences/brute/CSNK1A1_dna.fasta‎

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>NM_001892.6 Homo sapiens casein kinase 1 alpha 1 (CSNK1A1), transcript variant 2, mRNA
2+
ATGGCATCATCATCAGGCTCGAAAGCAGAATTTATTGTCGGCGGAAAATATAAGCTTGTT
3+
CGCAAAATCGGTTCCGGCTCTTTCGGTGATATTTATCTCGCTATCAATATTACTAACGGT
4+
GAGGAAGTTGCAGTGAAGCTGGAGAGTCAGAAGGCCCGCCATCCTCAGCTGCTTTATGAA
5+
TCGAAATTGTACAAAATCCTGCAAGGAGGGGTGGGCATCCCGCACATTAGATGGTACGGC
6+
CAAGAGAAAGATTACAACGTCCTTGTCATGGACTTACTGGGCCCGTCACTAGAAGATCTT
7+
TTCAACTTCTGTAGCAGGCGTTTCACAATGAAGACAGTCTTGATGCTGGCAGACCAAATG
8+
ATTAGCCGAATCGAGTATGTGCATACCAAAAACTTTATTCATCGTGATATAAAACCGGAT
9+
AACTTCCTCATGGGCATCGGTCGCCACTGTAATAAACTGTTCCTCATAGACTTTGGCCTG
10+
GCGAAAAAATATCGGGATAACCGAACTCGCCAACATATCCCTTACAGAGAAGATAAAAAC
11+
TTAACGGGTACCGCTCGGTACGCGTCTATCAACGCACACCTAGGCATAGAACAATCACGA
12+
AGGGACGATATGGAATCCTTGGGTTATGTACTTATGTACTTCAATAGGACCTCGCTGCCT
13+
TGGCAGGGGCTCAAAGCGGCCACGAAGAAGCAGAAGTACGAGAAGATCAGTGAAAAAAAA
14+
ATGAGTACGCCGGTAGAGGTACTGTGTAAGGGATTCCCAGCAGAGTTTGCGATGTACCTT
15+
AACTATTGCCGAGGTCTTCGCTTCGAGGAAGCACCGGACTACATGTACCTGCGTCAGTTG
16+
TTTCGGATTCTGTTTAGGACTCTGAATCACCAGTATGATTACACCTTCGATTGGACGATG
17+
TTGAAGCAAAAAGCCGCCCAGCAGGCAGCGTCTAGTAGCGGTCAGGGTCAGCAAGCCCAA
18+
ACTCCTACAGGGAAACAGACGGATAAAACCAAATCTAACATGAAGGGTTTCTAA

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