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1 | 1 | FROM ubuntu:jammy |
2 | 2 |
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3 | | -ENV HOME /root |
| 3 | +ENV HOME=/root |
4 | 4 |
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5 | | -RUN apt-get update -y && apt-get upgrade -y && \ |
6 | | - apt-get -y install --no-install-recommends \ |
7 | | - gnupg2 \ |
8 | | - software-properties-common \ |
9 | | - wget && \ |
10 | | - wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB -P/tmp && \ |
| 5 | +# Update and install necessary packages |
| 6 | +RUN apt-get update -y && apt-get upgrade -y |
| 7 | +RUN apt-get -y install --no-install-recommends gnupg2 software-properties-common wget |
| 8 | + |
| 9 | +# Adding intel ppa and installing packages |
| 10 | +RUN wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB -P/tmp && \ |
11 | 11 | apt-key add /tmp/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB && \ |
12 | 12 | rm /tmp/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB && \ |
13 | | - echo deb https://apt.repos.intel.com/oneapi all main > /etc/apt/sources.list.d/oneAPI.list && \ |
14 | | - add-apt-repository ppa:git-core/ppa && \ |
15 | | - apt-get -y update && \ |
16 | | - apt-get install -y --no-install-recommends \ |
17 | | - sudo \ |
18 | | - build-essential \ |
19 | | - g++-12 \ |
20 | | - gfortran-12 \ |
21 | | - clang-14 \ |
22 | | - libomp-dev \ |
23 | | - cmake \ |
24 | | - gfortran \ |
25 | | - git \ |
26 | | - intel-oneapi-compiler-dpcpp-cpp \ |
27 | | - intel-oneapi-mkl-devel \ |
28 | | - libboost-dev \ |
29 | | - libhdf5-dev \ |
30 | | - libhdf5-openmpi-dev \ |
31 | | - libmetis-dev \ |
32 | | - libopenmpi-dev \ |
33 | | - libscotch-dev \ |
34 | | - libtrilinos-amesos-dev \ |
35 | | - libtrilinos-amesos2-dev \ |
36 | | - libtrilinos-aztecoo-dev \ |
37 | | - libtrilinos-epetra-dev \ |
38 | | - libtrilinos-epetraext-dev \ |
39 | | - libtrilinos-ifpack-dev \ |
40 | | - libtrilinos-ml-dev \ |
41 | | - libtrilinos-teuchos-dev \ |
42 | | - libtrilinos-tpetra-dev \ |
43 | | - libtrilinos-kokkos-dev \ |
44 | | - libtrilinos-kokkos-kernels-dev \ |
45 | | - libtrilinos-shylu-dev \ |
46 | | - libmedc-dev \ |
47 | | - openmpi-bin \ |
48 | | - python3-dev \ |
49 | | - python3-h5py \ |
50 | | - python3-pip && \ |
51 | | - python3 -m pip install --upgrade pip && \ |
52 | | - pip3 install \ |
53 | | - numpy \ |
54 | | - scipy \ |
55 | | - sympy \ |
56 | | - parameterized && \ |
57 | | - # install MMG 5.5 |
58 | | - git clone -b 'v5.5.1' --depth 1 https://github.com/MmgTools/mmg /tmp/mmg_5_5_1 && \ |
| 13 | + echo deb https://apt.repos.intel.com/oneapi all main > /etc/apt/sources.list.d/oneAPI.list |
| 14 | + |
| 15 | +# Update again with the new ppa |
| 16 | +RUN add-apt-repository ppa:git-core/ppa && \ |
| 17 | + apt-get -y update |
| 18 | + |
| 19 | +# Install packages |
| 20 | +RUN apt-get install -y --no-install-recommends \ |
| 21 | + sudo \ |
| 22 | + build-essential \ |
| 23 | + g++-12 \ |
| 24 | + gfortran-12 \ |
| 25 | + clang-14 \ |
| 26 | + libomp-dev \ |
| 27 | + cmake \ |
| 28 | + gfortran \ |
| 29 | + git \ |
| 30 | + intel-oneapi-compiler-dpcpp-cpp \ |
| 31 | + intel-oneapi-mkl-devel \ |
| 32 | + libboost-dev \ |
| 33 | + libhdf5-dev \ |
| 34 | + libhdf5-openmpi-dev \ |
| 35 | + libmetis-dev \ |
| 36 | + libopenmpi-dev \ |
| 37 | + libscotch-dev \ |
| 38 | + libtrilinos-amesos-dev \ |
| 39 | + libtrilinos-amesos2-dev \ |
| 40 | + libtrilinos-aztecoo-dev \ |
| 41 | + libtrilinos-epetra-dev \ |
| 42 | + libtrilinos-epetraext-dev \ |
| 43 | + libtrilinos-ifpack-dev \ |
| 44 | + libtrilinos-ml-dev \ |
| 45 | + libtrilinos-teuchos-dev \ |
| 46 | + libtrilinos-tpetra-dev \ |
| 47 | + libtrilinos-kokkos-dev \ |
| 48 | + libtrilinos-kokkos-kernels-dev \ |
| 49 | + libtrilinos-shylu-dev \ |
| 50 | + libmedc-dev \ |
| 51 | + openmpi-bin \ |
| 52 | + python3-dev \ |
| 53 | + python3-h5py \ |
| 54 | + python3-pip |
| 55 | + |
| 56 | +# Upgrade Pip |
| 57 | +RUN python3 -m pip install --upgrade pip |
| 58 | + |
| 59 | +# Install Python packages |
| 60 | +RUN pip3 install numpy scipy sympy parameterized |
| 61 | + |
| 62 | +# install MMG 5.5 |
| 63 | +RUN git clone -b 'v5.5.1' --depth 1 https://github.com/MmgTools/mmg /tmp/mmg_5_5_1 && \ |
59 | 64 | mkdir /tmp/mmg_5_5_1/build && \ |
60 | 65 | mkdir -p /external_libraries/mmg/mmg_5_5_1 && \ |
61 | 66 | cd /tmp/mmg_5_5_1/build && \ |
62 | 67 | cmake .. -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_C_FLAGS="-w" -DCMAKE_CXX_FLAGS="-w" -DCMAKE_INSTALL_PREFIX="/external_libraries/mmg/mmg_5_5_1" -DUSE_SCOTCH=OFF -DLIBMMG3D_SHARED=ON -DLIBMMG2D_SHARED=ON -DLIBMMGS_SHARED=ON -DLIBMMG_SHARED=ON && \ |
63 | 68 | make -j2 install && \ |
64 | | - cd / && \ |
65 | | - # install PARMMG |
66 | | - git clone https://github.com/MmgTools/ParMmg /tmp/ParMmg_5ffc6ad && \ |
| 69 | + cd / |
| 70 | + |
| 71 | +# install PARMMG |
| 72 | +RUN git clone https://github.com/MmgTools/ParMmg /tmp/ParMmg_5ffc6ad && \ |
67 | 73 | mkdir /tmp/ParMmg_5ffc6ad/build && \ |
68 | 74 | mkdir -p /external_libraries/ParMmg_5ffc6ad && \ |
69 | 75 | cd /tmp/ParMmg_5ffc6ad/build && git checkout 5ffc6ada4afb1af50a43e1fa6f4c409cff2ea25c && \ |
70 | 76 | cmake .. -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_C_FLAGS="-w" -DCMAKE_CXX_FLAGS="-w" -DCMAKE_INSTALL_PREFIX="/external_libraries/ParMmg_5ffc6ad" -DUSE_SCOTCH=OFF -DLIBPARMMG_SHARED=ON -DDOWNLOAD_MMG=OFF -DMMG_DIR="/tmp/mmg_5_5_1" -DMMG_BUILDDIR="/tmp/mmg_5_5_1/build" -DDOWNLOAD_METIS=OFF -DMETIS_DIR="/usr/include" && \ |
71 | 77 | make -j2 install && \ |
72 | 78 | rm -r /tmp/mmg_5_5_1 && \ |
73 | 79 | rm -r /tmp/ParMmg_5ffc6ad && \ |
74 | | - cd / && \ |
75 | | - # remove some now unnecessary packages |
76 | | - apt-get -y remove \ |
| 80 | + cd / |
| 81 | + |
| 82 | +# Install Boost (form zip) |
| 83 | +RUN mkdir -p /workspace/boost && \ |
| 84 | + wget -P /workspace/boost https://archives.boost.io/release/1.87.0/source/boost_1_87_0.tar.gz && \ |
| 85 | + tar -C /workspace/boost -xzf /workspace/boost/boost_1_87_0.tar.gz && \ |
| 86 | + rm /workspace/boost/boost_1_87_0.tar.gz |
| 87 | + |
| 88 | +# Remove unnecessary packages |
| 89 | +RUN apt-get -y remove \ |
77 | 90 | gnupg2 \ |
78 | 91 | software-properties-common \ |
79 | 92 | wget && \ |
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