Fixed sprintf not Windows path compatible issue. Bug fixed, error occurred when click results button of Check3DCellSegmentationProcess for some dataset.

Author: JennyZouUTSW

MovieData/Check3DCellSegmentationProcess.m

@@ -79,7 +79,7 @@
             %% WIP - fix volume size change issue?
             zp = floor((size(stack3D,3)-obj.owner_.zSize_)/2)+1;
             xyp = floor((size(stack3D,1)-obj.owner_.imSize_(1))/2);
-            mask = stack3D(xyp:(size(stack3D,2)-xyp),xyp:(size(stack3D,2)-xyp),zp:(size(stack3D,3)-zp));
+            mask = stack3D(xyp:(size(stack3D,1)-xyp),xyp:(size(stack3D,2)-xyp),zp:(size(stack3D,3)-zp));
 
             mask = mask(:, :, p.iZ+1);
 %             mask = stack3D(:,:,p.iZ-zp);

PatchMerge/patchMergeMeshMD.m

@@ -114,13 +114,13 @@ function patchMergeMeshMD(processOrMovieData, varargin)
         disp(['      image ' num2str(t) ' (channel ' num2str(c) ')'])
 
         % load the surface, curvature and patch segmentation data
-        sStruct = load(sprintf(surfacePath, c, t));
-        cStruct = load(sprintf(curvaturePath, c, t));
-        cuStruct = load(sprintf(curvatureUnsmoothedPath, c, t));
-        gStruct = load(sprintf(gaussPath, c, t));
-        nStruct = load(sprintf(neighborsPath, c, t));
-        csStruct = load(sprintf(surfaceSegPath, c, t));
-        psStruct = load(sprintf(pairStatsPath, c, t));
+        sStruct = load(sprintfPath(surfacePath, c, t));
+        cStruct = load(sprintfPath(curvaturePath, c, t));
+        cuStruct = load(sprintfPath(curvatureUnsmoothedPath, c, t));
+        gStruct = load(sprintfPath(gaussPath, c, t));
+        nStruct = load(sprintfPath(neighborsPath, c, t));
+        csStruct = load(sprintfPath(surfaceSegPath, c, t));
+        psStruct = load(sprintfPath(pairStatsPath, c, t));
 
         % merge patches using an SVM
         surfaceSegmentPatchMerge = mergePatchesSVM(sStruct.surface, csStruct.surfaceSegment, psStruct.pairStats, svmStruct.inModelAll, svmStruct.SVMmodelAll, nStruct.neighbors, cStruct.meanCurvature, cuStruct.meanCurvatureUnsmoothed, gStruct.gaussCurvatureUnsmoothed, MD.pixelSize_);

patchDescribe/patchDescriptionForMergeMeshMD.m

@@ -98,12 +98,12 @@ function patchDescriptionForMergeMeshMD(processOrMovieData, varargin)
         disp(['   image ' num2str(t) ' (channel ' num2str(c) ')'])
 
         % load the surface, curvature and patch segmentation data
-        sStruct = load(sprintf(surfacePath, c, t));
-        cStruct = load(sprintf(curvaturePath, c, t));
-        cuStruct = load(sprintf(curvatureUnsmoothedPath, c, t));
-        gStruct = load(sprintf(gaussPath, c, t));
-        nStruct = load(sprintf(neighborsPath, c, t));
-        csStruct = load(sprintf(surfaceSegPath, c, t));
+        sStruct = load(sprintfPath(surfacePath, c, t));
+        cStruct = load(sprintfPath(curvaturePath, c, t));
+        cuStruct = load(sprintfPath(curvatureUnsmoothedPath, c, t));
+        gStruct = load(sprintfPath(gaussPath, c, t));
+        nStruct = load(sprintfPath(neighborsPath, c, t));
+        csStruct = load(sprintfPath(surfaceSegPath, c, t));
 
         % calculate statistics for adjacent pairs of patches 
         patchPairs = findAdjacentPatchPairs(csStruct.surfaceSegment, nStruct.neighbors);

utilities/sprintfPath.m

@@ -1,4 +1,4 @@
-function path=sprintfPath(XYProjTemplate,fIdx)
+function path=sprintfPath(XYProjTemplate,varargin)
 % making sprintf windows-path-proof
 % sprintf applied on the filename only
 %
@@ -21,5 +21,5 @@
 % 
 % 
 [folder,file,ext]=fileparts(XYProjTemplate);
-filename=sprintf(file,fIdx);
+filename=sprintf(file,varargin{:});
 path=fullfile(folder,[filename ext]);