Release prep for v3.3.4 (#438)

* turn on linux 3.11 wheels;
  * windows still depend on h5py, and there are no wheels for 3.11
  * macOS 3.11 h5py doesn't build, so we can't test our macos 311 wheels

Author: mgeplf

.github/workflows/publish-sdist-wheels.yml

@@ -4,7 +4,7 @@ on: [pull_request, push]
 env:
   CIBW_BUILD_VERBOSITY: 3
   CIBW_BUILD: 'cp*'
-  CIBW_SKIP: 'cp35-* cp36-* *-manylinux_i686 *-musllinux_* *-win32 cp311-*'
+  CIBW_SKIP: 'cp35-* cp36-* *-manylinux_i686 *-musllinux_* *-win32 cp311-win_amd64 cp311-macosx_x86_64'
   CIBW_BEFORE_TEST: pip install -r {project}/tests/requirement_tests.txt
   CIBW_TEST_COMMAND: pytest -s -v {project}/tests
 
@@ -84,6 +84,7 @@ jobs:
             #brew update
             #brew --version
             export HOMEBREW_NO_AUTO_UPDATE=1
+            export HDF5_DIR="$(brew --prefix hdf5)";
             brew install hdf5
         run: |
           python -m cibuildwheel --output-dir dist

CHANGELOG.md

@@ -1,3 +1,4 @@
+
 v3.3.4
 ======
 
@@ -6,12 +7,15 @@ New Features:
 * Allow SWC and ASC morphologies to be built from strings (#407)
 
 Fixes:
+* Replace assert by exception (#436)
+* Render README as RST (#434)
 * Fallback to using python 3.10 for ci tests (#430)
 * Fix sscanf clammping of allowed inputs (#420)
 * Fix section order after deleting section in mut morphology (#412)
 * Enable test mistakenly disabled (#418)
 * Freeze wheel build os versions (#391)
 * Fix wrong section order when section is deleted (#412)
+* Add 3.11 wheels Linux; macOS/Windows ones require h5py to release an updated wheel for python 3.11
 
 Improvements:
 * Remove travis configuration and badge (#428)
@@ -24,17 +28,17 @@ Improvements:
 * Update lexertl14 to latest commit cd5a1f1 (#397)
 * Update HighFive to v2.4.1 (#406)
 * Update gsl-lite submodule to v0.40.0 (#395)
-* Use non-exceptional methods wherever possible (#389)*
+* Use non-exceptional methods wherever possible (#389)
 * Rebuild morphologies only when modifiers are passed (#392)
 
 
 v3.3.3
 ======
 
 New Features:
-* Vasculature section_offsets & section_connectivity (#352)
-* n_points method for immutable Morphology and Vasculature (#359)
-* is_heterogeneous method for checking downstream/upstream section type homogeneity (#360)
+* Vasculature `section_offsets` & `section_connectivity` (#352)
+* `n_points method` for immutable Morphology and Vasculature (#359)
+* `is_heterogeneous` method for checking downstream/upstream section type homogeneity (#360)
 
 Fixes:
 * Fixed documentation links (#350)
@@ -60,7 +64,7 @@ Fixes:
 * Imbue enums with numeric operations (#330)
 * Remove unused AccessMode enum (#331)
 * Don't compile c++ tests when creating python package (#332)
-* Use std::make_unique (#333)
+* Use `std::make_unique` (#333)
 * Updated tests (#340)
 * Allow lowercase neurite names
 * Allow whitespace in CellBody neurite