added copy of metadata to raw group

Author: Arthur Glowacki

src/io/file/hdf5_io.cpp

@@ -512,7 +512,7 @@ bool HDF5_IO::end_save_seq(bool loginfo)
 
 //-----------------------------------------------------------------------------
 
-bool HDF5_IO::polar_copy_raw(const std::string filename)
+bool HDF5_IO::copy_to_raw_grp(const std::string filename, const std::string src_path)
 {
     hid_t src_file_id = -1;
     hid_t src_grp_id = -1;
@@ -547,7 +547,7 @@ bool HDF5_IO::polar_copy_raw(const std::string filename)
         return false;
     }
     //copy /entry to /MAPS/raw
-    herr_t status = H5Ocopy(src_grp_id, "entry", maps_grp_id, "Raw", ocpypl_id, H5P_DEFAULT);
+    herr_t status = H5Ocopy(src_grp_id, src_path.c_str(), maps_grp_id, "Raw", ocpypl_id, H5P_DEFAULT);
     if (status > 0)
     {
         logW << "Failed to copy from /entry to /MAPS/Raw\n";

src/io/file/hdf5_io.h

@@ -5867,7 +5867,7 @@ class DLL_EXPORT HDF5_IO
 
     const std::string& get_filename() { return _cur_filename; }
 
-    bool polar_copy_raw(const std::string filename);
+    bool copy_to_raw_grp(const std::string filename, const std::string src_path);
 
     //-----------------------------------------------------------------------------
 

src/io/file/hl_file_io.h

@@ -924,7 +924,7 @@ DLL_EXPORT bool load_spectra_volume(std::string dataset_directory,
                 data_struct::Params_Override<double>* null_po = nullptr;
                 io::file::HDF5_IO::inst()->save_scan_scalers(&scan_info, null_po);
                 // copy /entry to /MAPS/raw
-                io::file::HDF5_IO::inst()->polar_copy_raw(dataset_directory+dataset_file);
+                io::file::HDF5_IO::inst()->copy_to_raw_grp(dataset_directory+dataset_file, "entry");
                 return true;
             }
             else
@@ -1173,6 +1173,7 @@ DLL_EXPORT bool load_spectra_volume(std::string dataset_directory,
             scan_type = scan_info_edf.meta_info.scan_type;
             io::file::HDF5_IO::inst()->start_save_seq(true);
             io::file::HDF5_IO::inst()->save_scan_scalers(&scan_info_edf, params_override);
+            io::file::HDF5_IO::inst()->copy_to_raw_grp(dataset_directory+dataset_file, "metadata");
             return true;
         }
     }